src/ten/estimate.c File Reference

#include "ten.h"
#include "privateTen.h"

Include dependency graph for estimate.c:

Enumerations
enum	{   flagUnknown, flagEstimateMethod, flagBInfo, flagAllNum,   flagDwiNum, flagAllAlloc, flagDwiAlloc, flagAllSet,   flagDwiSet, flagSkipSet, flagWght, flagEmat,   flagLast }
Functions
int	_tenGaussian (double *retP, double m, double t, double s)
int	_tenRicianTrue (double *retP, double m, double t, double s)
int	_tenRicianSafe (double *retP, double m, double t, double s)
int	_tenRician (double *retP, double m, double t, double s)
void	_tenEstimateOutputInit (tenEstimateContext *tec)
tenEstimateContext *	tenEstimateContextNew ()
tenEstimateContext *	tenEstimateContextNix (tenEstimateContext *tec)
void	tenEstimateVerboseSet (tenEstimateContext *tec, int verbose)
void	tenEstimateNegEvalShiftSet (tenEstimateContext *tec, int doit)
int	tenEstimateMethodSet (tenEstimateContext *tec, int estimateMethod)
int	tenEstimateSigmaSet (tenEstimateContext *tec, double sigma)
int	tenEstimateValueMinSet (tenEstimateContext *tec, double valueMin)
int	tenEstimateGradientsSet (tenEstimateContext *tec, const Nrrd *ngrad, double bValue, int estimateB0)
int	tenEstimateBMatricesSet (tenEstimateContext *tec, const Nrrd *nbmat, double bValue, int estimateB0)
int	tenEstimateSkipSet (tenEstimateContext *tec, unsigned int valIdx, int doSkip)
int	tenEstimateSkipReset (tenEstimateContext *tec)
int	tenEstimateThresholdSet (tenEstimateContext *tec, double thresh, double soft)
int	_tenEstimateCheck (tenEstimateContext *tec)
int	_tenEstimateNumUpdate (tenEstimateContext *tec)
int	_tenEstimateAllAllocUpdate (tenEstimateContext *tec)
int	_tenEstimateDwiAllocUpdate (tenEstimateContext *tec)
int	_tenEstimateAllSetUpdate (tenEstimateContext *tec)
int	_tenEstimateDwiSetUpdate (tenEstimateContext *tec)
int	_tenEstimateWghtUpdate (tenEstimateContext *tec)
int	_tenEstimateEmatUpdate (tenEstimateContext *tec)
int	tenEstimateUpdate (tenEstimateContext *tec)
void	_tenEstimateValuesSet (tenEstimateContext *tec)
double	_tenEstimateErrorDwi (tenEstimateContext *tec)
double	_tenEstimateErrorLogDwi (tenEstimateContext *tec)
int	_tenEstimate1TensorSimulateSingle (tenEstimateContext *tec, double sigma, double bValue, double B0, const double ten[7])
int	tenEstimate1TensorSimulateSingle_f (tenEstimateContext *tec, float *simval, float sigma, float bValue, float B0, const float _ten[7])
int	tenEstimate1TensorSimulateSingle_d (tenEstimateContext *tec, double *simval, double sigma, double bValue, double B0, const double ten[7])
int	tenEstimate1TensorSimulateVolume (tenEstimateContext *tec, Nrrd *ndwi, double sigma, double bValue, const Nrrd *nB0, const Nrrd *nten, int outType, int keyValueSet)
int	_tenEstimate1Tensor_LLS (tenEstimateContext *tec)
int	_tenEstimate1Tensor_WLS (tenEstimateContext *tec)
int	_tenEstimate1TensorGradient (tenEstimateContext *tec, double *gradB0P, double gradTen[7], double B0, double ten[7], double epsilon, int(*gradientCB)(tenEstimateContext *tec, double *gradB0P, double gTen[7], double B0, double ten[7]), int(*badnessCB)(tenEstimateContext *tec, double *badP, double B0, double ten[7]))
int	_tenEstimate1TensorDescent (tenEstimateContext *tec, int(*gradientCB)(tenEstimateContext *tec, double *gradB0, double gradTen[7], double B0, double ten[7]), int(*badnessCB)(tenEstimateContext *tec, double *badP, double B0, double ten[7]))
int	_tenEstimate1Tensor_GradientNLS (tenEstimateContext *tec, double *gradB0P, double gradTen[7], double currB0, double currTen[7])
int	_tenEstimate1Tensor_BadnessNLS (tenEstimateContext *tec, double *retP, double currB0, double currTen[7])
int	_tenEstimate1Tensor_NLS (tenEstimateContext *tec)
int	_tenEstimate1Tensor_GradientMLE (tenEstimateContext *tec, double *gradB0P, double gradTen[7], double currB0, double currTen[7])
int	_tenEstimate1Tensor_BadnessMLE (tenEstimateContext *tec, double *retP, double currB0, double curt[7])
int	_tenEstimate1Tensor_MLE (tenEstimateContext *tec)
int	_tenEstimate1TensorSingle (tenEstimateContext *tec)
int	tenEstimate1TensorSingle_f (tenEstimateContext *tec, float ten[7], const float *all)
int	tenEstimate1TensorSingle_d (tenEstimateContext *tec, double ten[7], const double *all)
int	tenEstimate1TensorVolume4D (tenEstimateContext *tec, Nrrd *nten, Nrrd **nB0P, Nrrd **nterrP, const Nrrd *ndwi, int outType)

---

Enumeration Type Documentation

anonymous enum

Enumerator:

flagUnknown
flagEstimateMethod
flagBInfo
flagAllNum
flagDwiNum
flagAllAlloc
flagDwiAlloc
flagAllSet
flagDwiSet
flagSkipSet
flagWght
flagEmat
flagLast

---

Function Documentation

int _tenEstimate1Tensor_BadnessMLE	(	tenEstimateContext *	tec,
		double *	retP,
		double	currB0,
		double	curt[7]
	)

int _tenEstimate1Tensor_BadnessNLS	(	tenEstimateContext *	tec,
		double *	retP,
		double	currB0,
		double	currTen[7]
	)

int _tenEstimate1Tensor_GradientMLE	(	tenEstimateContext *	tec,
		double *	gradB0P,
		double	gradTen[7],
		double	currB0,
		double	currTen[7]
	)

int _tenEstimate1Tensor_GradientNLS	(	tenEstimateContext *	tec,
		double *	gradB0P,
		double	gradTen[7],
		double	currB0,
		double	currTen[7]
	)

int _tenEstimate1Tensor_LLS

(

tenEstimateContext *

tec

)

int _tenEstimate1Tensor_MLE

(

tenEstimateContext *

tec

)

int _tenEstimate1Tensor_NLS

(

tenEstimateContext *

tec

)

int _tenEstimate1Tensor_WLS

(

tenEstimateContext *

tec

)

int _tenEstimate1TensorDescent	(	tenEstimateContext *	tec,
		int(*)(tenEstimateContext *tec, double *gradB0, double gradTen[7], double B0, double ten[7])	gradientCB,
		int(*)(tenEstimateContext *tec, double *badP, double B0, double ten[7])	badnessCB
	)

int _tenEstimate1TensorGradient	(	tenEstimateContext *	tec,
		double *	gradB0P,
		double	gradTen[7],
		double	B0,
		double	ten[7],
		double	epsilon,
		int(*)(tenEstimateContext *tec, double *gradB0P, double gTen[7], double B0, double ten[7])	gradientCB,
		int(*)(tenEstimateContext *tec, double *badP, double B0, double ten[7])	badnessCB
	)

int _tenEstimate1TensorSimulateSingle	(	tenEstimateContext *	tec,
		double	sigma,
		double	bValue,
		double	B0,
		const double	ten[7]
	)

int _tenEstimate1TensorSingle

(

tenEstimateContext *

tec

)

int _tenEstimateAllAllocUpdate

(

tenEstimateContext *

tec

)

int _tenEstimateAllSetUpdate

(

tenEstimateContext *

tec

)

int _tenEstimateCheck

(

tenEstimateContext *

tec

)

int _tenEstimateDwiAllocUpdate

(

tenEstimateContext *

tec

)

int _tenEstimateDwiSetUpdate

(

tenEstimateContext *

tec

)

int _tenEstimateEmatUpdate

(

tenEstimateContext *

tec

)

double _tenEstimateErrorDwi

(

tenEstimateContext *

tec

)

double _tenEstimateErrorLogDwi

(

tenEstimateContext *

tec

)

int _tenEstimateNumUpdate

(

tenEstimateContext *

tec

)

void _tenEstimateOutputInit

(

tenEstimateContext *

tec

)

void _tenEstimateValuesSet

(

tenEstimateContext *

tec

)

int _tenEstimateWghtUpdate

(

tenEstimateContext *

tec

)

int _tenGaussian	(	double *	retP,
		double	m,
		double	t,
		double	s
	)

int _tenRician	(	double *	retP,
		double	m,
		double	t,
		double	s
	)

int _tenRicianSafe	(	double *	retP,
		double	m,
		double	t,
		double	s
	)

int _tenRicianTrue	(	double *	retP,
		double	m,
		double	t,
		double	s
	)

int tenEstimate1TensorSimulateSingle_d	(	tenEstimateContext *	tec,
		double *	simval,
		double	sigma,
		double	bValue,
		double	B0,
		const double	ten[7]
	)

int tenEstimate1TensorSimulateSingle_f	(	tenEstimateContext *	tec,
		float *	simval,
		float	sigma,
		float	bValue,
		float	B0,
		const float	_ten[7]
	)

int tenEstimate1TensorSimulateVolume	(	tenEstimateContext *	tec,
		Nrrd *	ndwi,
		double	sigma,
		double	bValue,
		const Nrrd *	nB0,
		const Nrrd *	nten,
		int	outType,
		int	keyValueSet
	)

int tenEstimate1TensorSingle_d	(	tenEstimateContext *	tec,
		double	ten[7],
		const double *	all
	)

int tenEstimate1TensorSingle_f	(	tenEstimateContext *	tec,
		float	ten[7],
		const float *	all
	)

int tenEstimate1TensorVolume4D	(	tenEstimateContext *	tec,
		Nrrd *	nten,
		Nrrd **	nB0P,
		Nrrd **	nterrP,
		const Nrrd *	ndwi,
		int	outType
	)

int tenEstimateBMatricesSet	(	tenEstimateContext *	tec,
		const Nrrd *	nbmat,
		double	bValue,
		int	estimateB0
	)

tenEstimateContext* tenEstimateContextNew

(

)

tenEstimateContext* tenEstimateContextNix

(

tenEstimateContext *

tec

)

int tenEstimateGradientsSet	(	tenEstimateContext *	tec,
		const Nrrd *	ngrad,
		double	bValue,
		int	estimateB0
	)

int tenEstimateMethodSet	(	tenEstimateContext *	tec,
		int	estimateMethod
	)

void tenEstimateNegEvalShiftSet	(	tenEstimateContext *	tec,
		int	doit
	)

int tenEstimateSigmaSet	(	tenEstimateContext *	tec,
		double	sigma
	)

int tenEstimateSkipReset

(

tenEstimateContext *

tec

)

int tenEstimateSkipSet	(	tenEstimateContext *	tec,
		unsigned int	valIdx,
		int	doSkip
	)

int tenEstimateThresholdSet	(	tenEstimateContext *	tec,
		double	thresh,
		double	soft
	)

int tenEstimateUpdate

(

tenEstimateContext *

tec

)

int tenEstimateValueMinSet	(	tenEstimateContext *	tec,
		double	valueMin
	)

void tenEstimateVerboseSet	(	tenEstimateContext *	tec,
		int	verbose
	)