SHOGUN

o+SHOGUN Project Documentation

o+Class List

|o*Cache

|o*CAlphabet

|o*CArray< T >

|o*CArray2< T >

|o*CArray3< T >

|o*CAUCKernel

|o*CByteFeatures

|o*CCache< T >

|o*CCanberraMetric

|o*CCanberraWordDistance

|o*CCharFeatures

|o*CChebyshewMetric

|o*CChi2Kernel

|o*CClassifier

|o*CCombinedFeatures

|o*CCombinedKernel

|o*CCommUlongStringKernel

|o*CCommWordStringKernel

|o*CConstKernel

|o*CCustomKernel

|o*CDiagKernel

|o*CDistance

|o*CDistanceKernel

|o*CDistanceMachine

|o*CDistribution

|o*CDynamicArray< T >

|o*CDynProg

|o*CDynProg::segment_loss_struct

|o*CDynProg::svm_values_struct

|o*CEuclidianDistance

|o*CFeatures

|o*CFile

|o*CFixedDegreeStringKernel

|o*CFKFeatures

|o*CGaussianKernel

|o*CGaussianShiftKernel

|o*CGeodesicMetric

|o*CGHMM

|o*CGMNPLib

|o*CGMNPSVM

|o*CGNPPLib

|o*CGNPPSVM

|o*CGPBTSVM

|o*CHammingWordDistance

|o*CHierarchical

|o*CHistogram

|o*CHistogramWordKernel

|o*CHMM

|o*CIntFeatures

|o*CIO

|o*CJensenMetric

|o*CKernel

|o*CKernelMachine

|o*CKernelPerceptron

|o*CKMeans

|o*CKNN

|o*CLabels

|o*CLibSVM

|o*CLibSVMMultiClass

|o*CLibSVMOneClass

|o*CLibSVR

|o*CLinearByteKernel

|o*CLinearClassifier

|o*CLinearHMM

|o*CLinearKernel

|o*CLinearStringKernel

|o*CLinearWordKernel

|o*CList< T >

|o*CListElement< T >

|o*CLocalAlignmentStringKernel

|o*CLocalityImprovedStringKernel

|o*CLogPlusOne

|o*CManhattanMetric

|o*CManhattanWordDistance

|o*CMath

|o*CMinkowskiMetric

|o*CModel

|o*CMPDSVM

|o*CMultiClassSVM

|o*CNormDerivativeLem3

|o*CNormOne

|o*ConsensusEntry

|o*CParallel

|o*CPerceptron

|o*CPerformanceMeasures

|o*CPlif

|o*CPlifArray

|o*CPlifBase

|o*CPluginEstimate

|o*CPolyKernel

|o*CPolyMatchStringKernel

|o*CPolyMatchWordKernel

|o*CPreProc

|o*CPruneVarSubMean

|o*CPyramidChi2

|o*CQPBSVMLib

|o*CRealDistance

|o*CRealFeatures

|o*CRealFileFeatures

|o*CSalzbergWordKernel

|o*CSGObject

|o*CShortFeatures

|o*CShortRealFeatures

|o*CSigmoidKernel

|o*CSignal

|o*CSimpleDistance< ST >

|o*CSimpleFeatures< ST >

|o*CSimpleFile< T >

|o*CSimpleKernel< ST >

|o*CSimpleLocalityImprovedStringKernel

|o*CSimplePreProc< ST >

|o*CSortUlongString

|o*CSortWord

|o*CSortWordString

|o*CSparseDistance< ST >

|o*CSparseEuclidianDistance

|o*CSparseFeatures< ST >

|o*CSparseGaussianKernel

|o*CSparseKernel< ST >

|o*CSparseLinearClassifier

|o*CSparseLinearKernel

|o*CSparsePolyKernel

|o*CSparsePreProc< ST >

|o*CStringDistance< ST >

|o*CStringFeatures< ST >

|o*CStringKernel< ST >

|o*CStringPreProc< ST >

|o*CSubGradientSVM

|o*CSVM

|o*CSVM::TModel

|o*CSVMLin

|o*CSVMOcas

|o*CSVMSGD

|o*CTime

|o*CTOPFeatures

|o*CTrie< Trie >

|o*CVersion

|o*CWDSVMOcas

|o*CWeightedCommWordStringKernel

|o*CWeightedDegreePositionStringKernel

|o*CWeightedDegreeStringKernel

|o*CWordFeatures

|o*CWordMatchKernel

|o*data

|o*decision_function

|o*Delta

|o*DNATrie

|o*Kernel

|o*ocas_return_value_T

|o*ONE_CLASS_Q

|o*options

|o*pair

|o*POIMTrie

|o*QMatrix

|o*QPproblem

|o*radix_stack_t< T >

|o*S_THREAD_PARAM< Trie >

|o*sCache

|o*ShogunException

|o*sKernel

|o*Solver

|o*Solver::SolutionInfo

|o*Solver_NU

|o*SVC_Q

|o*svm_model

|o*svm_node

|o*svm_parameter

|o*svm_problem

|o*SVR_Q

|o*T_ALPHA_BETA

|o*T_HMM_INDIZES

|o*T_STRING< T >

|o*thread_data

|o*thread_qsort

|o*TreeParseInfo

|o*TSparse< ST >

|o*TSparseEntry< ST >

|o*vector_double

|o*vector_int

|o*wdocas_thread_params_add

|\*wdocas_thread_params_output

o+Class Hierarchy

|o*Cache

|o*CDynProg::segment_loss_struct

|o*CDynProg::svm_values_struct

|o*CIO

|o*CList< T >

|o*CListElement< T >

|o*CModel

|o*ConsensusEntry

|o*CParallel

|o+CSGObject

||o*CAlphabet

||o+CArray< T >

||o*CCache< T >

||o*CCache< char >

||o*CCache< double >

||o*CCache< float >

||o*CCache< int >

||o*CCache< short int >

||o*CCache< unsigned char >

||o*CCache< unsigned short int >

||o+CClassifier

||o+CDistance

||o+CDistribution

||o*CDynamicArray< T >

||o*CDynProg

||o+CFeatures

||o*CFile

||o*CGMNPLib

||o*CGNPPLib

||o+CKernel

||o*CLabels

||o*CMath

||o*CPerformanceMeasures

||o+CPlifBase

||o+CPreProc

||o*CQPBSVMLib

||o*CSignal

||o*CSimpleFile< T >

||o*CTime

||o*CTrie< Trie >

||\*QPproblem

|o*CSVM::TModel

|o*CVersion

|o*data

|o*decision_function

|o*Delta

|o*DNATrie

|o*ocas_return_value_T

|o*options

|o*pair

|o*POIMTrie

|o+QMatrix

|o*radix_stack_t< T >

|o*S_THREAD_PARAM< Trie >

|o*sCache

|o*ShogunException

|o*sKernel

|o+Solver

|o*Solver::SolutionInfo

|o*svm_model

|o*svm_node

|o*svm_parameter

|o*svm_problem

|o*T_ALPHA_BETA

|o*T_HMM_INDIZES

|o*T_STRING< T >

|o*thread_data

|o*thread_qsort

|o*TreeParseInfo

|o*TSparse< ST >

|o*TSparseEntry< ST >

|o*vector_double

|o*vector_int

|o*wdocas_thread_params_add

|\*wdocas_thread_params_output

o*Class Members

o*Graphical Class Hierarchy

o+File List

|o*Alphabet.cpp

|o*Alphabet.h

|o*Array.h

|o*Array2.h

|o*Array3.h

|o*AUCKernel.cpp

|o*AUCKernel.h

|o*Authors.mainpage

|o*ByteFeatures.cpp

|o*ByteFeatures.h

|o*Cache.h

|o*CanberraMetric.cpp

|o*CanberraMetric.h

|o*CanberraWordDistance.cpp

|o*CanberraWordDistance.h

|o*CharFeatures.cpp

|o*CharFeatures.h

|o*ChebyshewMetric.cpp

|o*ChebyshewMetric.h

|o*Chi2Kernel.cpp

|o*Chi2Kernel.h

|o*Classifier.cpp

|o*Classifier.h

|o*CombinedFeatures.cpp

|o*CombinedFeatures.h

|o*CombinedKernel.cpp

|o*CombinedKernel.h

|o*common.h

|o*CommUlongStringKernel.cpp

|o*CommUlongStringKernel.h

|o*CommWordStringKernel.cpp

|o*CommWordStringKernel.h

|o*config.h

|o*ConstKernel.cpp

|o*ConstKernel.h

|o*Cplex.cpp

|o*Cplex.h

|o*CPLEXSVM.cpp

|o*CPLEXSVM.h

|o*CustomKernel.cpp

|o*CustomKernel.h

|o*DiagKernel.cpp

|o*DiagKernel.h

|o*Distance.cpp

|o*Distance.h

|o*DistanceKernel.cpp

|o*DistanceKernel.h

|o*DistanceMachine.cpp

|o*DistanceMachine.h

|o*Distribution.cpp

|o*Distribution.h

|o*Documentation.mainpage

|o*DynamicArray.h

|o*DynProg.cpp

|o*DynProg.h

|o*EuclidianDistance.cpp

|o*EuclidianDistance.h

|o*FAQ.mainpage

|o*Features.cpp

|o*Features.h

|o*File.cpp

|o*File.h

|o*FixedDegreeStringKernel.cpp

|o*FixedDegreeStringKernel.h

|o*FKFeatures.cpp

|o*FKFeatures.h

|o*GaussianKernel.cpp

|o*GaussianKernel.h

|o*GaussianShiftKernel.cpp

|o*GaussianShiftKernel.h

|o*GeodesicMetric.cpp

|o*GeodesicMetric.h

|o*GHMM.cpp

|o*GHMM.h

|o*gmnplib.cpp

|o*gmnplib.h

|o*GMNPSVM.cpp

|o*GMNPSVM.h

|o*gnpplib.cpp

|o*gnpplib.h

|o*GNPPSVM.cpp

|o*GNPPSVM.h

|o*GPBTSVM.cpp

|o*GPBTSVM.h

|o*gpdt.cpp

|o*gpdt.h

|o*gpdtsolve.cpp

|o*gpdtsolve.h

|o*gpm.cpp

|o*gpm.h

|o*HammingWordDistance.cpp

|o*HammingWordDistance.h

|o*Hierarchical.cpp

|o*Hierarchical.h

|o*Histogram.cpp

|o*Histogram.h

|o*HistogramWordKernel.cpp

|o*HistogramWordKernel.h

|o*HMM.cpp

|o*HMM.h

|o*Installation.mainpage

|o*Interfaces.mainpage

|o*IntFeatures.cpp

|o*IntFeatures.h

|o*io.cpp

|o*io.h

|o*JensenMetric.cpp

|o*JensenMetric.h

|o*Kernel.cpp

|o*Kernel.h

|o*KernelMachine.cpp

|o*KernelMachine.h

|o*KernelPerceptron.cpp

|o*KernelPerceptron.h

|o*KMeans.cpp

|o*KMeans.h

|o*KNN.cpp

|o*KNN.h

|o*KRR.cpp

|o*KRR.h

|o*Labels.cpp

|o*Labels.h

|o*lapack.cpp

|o*lapack.h

|o*LDA.cpp

|o*LDA.h

|o*LibLinear.cpp

|o*LibLinear.h

|o*libocas.cpp

|o*libocas.h

|o*libocas_common.h

|o*LibSVM.cpp

|o*LibSVM.h

|o*LibSVMMultiClass.cpp

|o*LibSVMMultiClass.h

|o*LibSVMOneClass.cpp

|o*LibSVMOneClass.h

|o*LibSVR.cpp

|o*LibSVR.h

|o*License.mainpage

|o*LinearByteKernel.cpp

|o*LinearByteKernel.h

|o*LinearClassifier.cpp

|o*LinearClassifier.h

|o*LinearHMM.cpp

|o*LinearHMM.h

|o*LinearKernel.cpp

|o*LinearKernel.h

|o*LinearStringKernel.cpp

|o*LinearStringKernel.h

|o*LinearWordKernel.cpp

|o*LinearWordKernel.h

|o*List.h

|o*LocalAlignmentStringKernel.cpp

|o*LocalAlignmentStringKernel.h

|o*LocalityImprovedStringKernel.cpp

|o*LocalityImprovedStringKernel.h

|o*LogPlusOne.cpp

|o*LogPlusOne.h

|o*LPBoost.cpp

|o*LPBoost.h

|o*LPM.cpp

|o*LPM.h

|o*ManhattanMetric.cpp

|o*ManhattanMetric.h

|o*ManhattanWordDistance.cpp

|o*ManhattanWordDistance.h

|o*Mathematics.cpp

|o*Mathematics.h

|o*matlab.h

|o*memory.cpp

|o*memory.h

|o*Methods.mainpage

|o*MindyGramFeatures.cpp

|o*MindyGramFeatures.h

|o*MindyGramKernel.cpp

|o*MindyGramKernel.h

|o*MinkowskiMetric.cpp

|o*MinkowskiMetric.h

|o*ModularInterfaces.mainpage

|o*MPDSVM.cpp

|o*MPDSVM.h

|o*MultiClassSVM.cpp

|o*MultiClassSVM.h

|o*NormDerivativeLem3.cpp

|o*NormDerivativeLem3.h

|o*NormOne.cpp

|o*NormOne.h

|o*octave.h

|o*Parallel.cpp

|o*Parallel.h

|o*PCACut.cpp

|o*PCACut.h

|o*Perceptron.cpp

|o*Perceptron.h

|o*PerformanceMeasures.cpp

|o*PerformanceMeasures.h

|o*Plif.cpp

|o*Plif.h

|o*PlifArray.cpp

|o*PlifArray.h

|o*PlifBase.h

|o*PluginEstimate.cpp

|o*PluginEstimate.h

|o*PolyKernel.cpp

|o*PolyKernel.h

|o*PolyMatchStringKernel.cpp

|o*PolyMatchStringKernel.h

|o*PolyMatchWordKernel.cpp

|o*PolyMatchWordKernel.h

|o*pr_loqo.cpp

|o*pr_loqo.h

|o*PreProc.cpp

|o*PreProc.h

|o*PruneVarSubMean.cpp

|o*PruneVarSubMean.h

|o*PyramidChi2.cpp

|o*PyramidChi2.h

|o*python.h

|o*qpbsvmlib.cpp

|o*qpbsvmlib.h

|o*qpssvmlib.cpp

|o*qpssvmlib.h

|o*r.h

|o*RealDistance.h

|o*RealFeatures.cpp

|o*RealFeatures.h

|o*RealFileFeatures.cpp

|o*RealFileFeatures.h

|o*SalzbergWordKernel.cpp

|o*SalzbergWordKernel.h

|o*Screenshots.mainpage

|o*SGObject.cpp

|o*SGObject.h

|o*ShogunException.cpp

|o*ShogunException.h

|o*ShortFeatures.cpp

|o*ShortFeatures.h

|o*ShortRealFeatures.cpp

|o*ShortRealFeatures.h

|o*SigmoidKernel.cpp

|o*SigmoidKernel.h

|o*Signal.cpp

|o*Signal.h

|o*SimpleDistance.h

|o*SimpleFeatures.h

|o*SimpleFile.h

|o*SimpleKernel.h

|o*SimpleLocalityImprovedStringKernel.cpp

|o*SimpleLocalityImprovedStringKernel.h

|o*SimplePreProc.h

|o*SortUlongString.cpp

|o*SortUlongString.h

|o*SortWord.cpp

|o*SortWord.h

|o*SortWordString.cpp

|o*SortWordString.h

|o*SparseDistance.h

|o*SparseEuclidianDistance.cpp

|o*SparseEuclidianDistance.h

|o*SparseFeatures.h

|o*SparseGaussianKernel.cpp

|o*SparseGaussianKernel.h

|o*SparseKernel.h

|o*SparseLinearClassifier.cpp

|o*SparseLinearClassifier.h

|o*SparseLinearKernel.cpp

|o*SparseLinearKernel.h

|o*SparsePolyKernel.cpp

|o*SparsePolyKernel.h

|o*SparsePreProc.h

|o*ssl.cpp

|o*ssl.h

|o*StaticCommandLineInterface.mainpage

|o*StaticInterfaces.mainpage

|o*StaticOctaveInterface.mainpage

|o*StaticPythonInterface.mainpage

|o*StaticRInterface.mainpage

|o*StringDistance.h

|o*StringFeatures.cpp

|o*StringFeatures.h

|o*StringKernel.h

|o*StringPreProc.h

|o*SubGradientLPM.cpp

|o*SubGradientLPM.h

|o*SubGradientSVM.cpp

|o*SubGradientSVM.h

|o*SVM.cpp

|o*SVM.h

|o*SVM_libsvm.cpp

|o*SVM_libsvm.h

|o*SVM_linear.cpp

|o*SVM_linear.h

|o*SVMLin.cpp

|o*SVMLin.h

|o*SVMOcas.cpp

|o*SVMOcas.h

|o*SVMSGD.cpp

|o*SVMSGD.h

|o*Time.cpp

|o*Time.h

|o*TOPFeatures.cpp

|o*TOPFeatures.h

|o*Trie.cpp

|o*Trie.h

|o*Tron.cpp

|o*Tron.h

|o*Tutorial.mainpage

|o*Version.cpp

|o*Version.h

|o*versionstring.h

|o*WDSVMOcas.cpp

|o*WDSVMOcas.h

|o*WeightedCommWordStringKernel.cpp

|o*WeightedCommWordStringKernel.h

|o*WeightedDegreePositionStringKernel.cpp

|o*WeightedDegreePositionStringKernel.h

|o*WeightedDegreeStringKernel.cpp

|o*WeightedDegreeStringKernel.h

|o*WordFeatures.cpp

|o*WordFeatures.h

|o*WordMatchKernel.cpp

|\*WordMatchKernel.h

o+Directory Hierarchy

|o+pages

|\+src

| o+base

| o+classifier

| o+clustering

| o+distance

| o+distributions

| o+evaluation

| o+features

| o+kernel

| |o*AUCKernel.cpp

| |o*AUCKernel.h

| |o*Chi2Kernel.cpp

| |o*Chi2Kernel.h

| |o*CombinedKernel.cpp

| |o*CombinedKernel.h

| |o*CommUlongStringKernel.cpp

| |o*CommUlongStringKernel.h

| |o*CommWordStringKernel.cpp

| |o*CommWordStringKernel.h

| |o*ConstKernel.cpp

| |o*ConstKernel.h

| |o*CustomKernel.cpp

| |o*CustomKernel.h

| |o*DiagKernel.cpp

| |o*DiagKernel.h

| |o*DistanceKernel.cpp

| |o*DistanceKernel.h

| |o*FixedDegreeStringKernel.cpp

| |o*FixedDegreeStringKernel.h

| |o*GaussianKernel.cpp

| |o*GaussianKernel.h

| |o*GaussianShiftKernel.cpp

| |o*GaussianShiftKernel.h

| |o*HistogramWordKernel.cpp

| |o*HistogramWordKernel.h

| |o*Kernel.cpp

| |o*Kernel.h

| |o*KernelMachine.cpp

| |o*KernelMachine.h

| |o*LinearByteKernel.cpp

| |o*LinearByteKernel.h

| |o*LinearKernel.cpp

| |o*LinearKernel.h

| |o*LinearStringKernel.cpp

| |o*LinearStringKernel.h

| |o*LinearWordKernel.cpp

| |o*LinearWordKernel.h

| |o*LocalAlignmentStringKernel.cpp

| |o*LocalAlignmentStringKernel.h

| |o*LocalityImprovedStringKernel.cpp

| |o*LocalityImprovedStringKernel.h

| |o*MindyGramKernel.cpp

| |o*MindyGramKernel.h

| |o*PolyKernel.cpp

| |o*PolyKernel.h

| |o*PolyMatchStringKernel.cpp

| |o*PolyMatchStringKernel.h

| |o*PolyMatchWordKernel.cpp

| |o*PolyMatchWordKernel.h

| |o*PyramidChi2.cpp

| |o*PyramidChi2.h

| |o*SalzbergWordKernel.cpp

| |o*SalzbergWordKernel.h

| |o*SigmoidKernel.cpp

| |o*SigmoidKernel.h

| |o*SimpleKernel.h

| |o*SimpleLocalityImprovedStringKernel.cpp

| |o*SimpleLocalityImprovedStringKernel.h

| |o*SparseGaussianKernel.cpp

| |o*SparseGaussianKernel.h

| |o*SparseKernel.h

| |o*SparseLinearKernel.cpp

| |o*SparseLinearKernel.h

| |o*SparsePolyKernel.cpp

| |o*SparsePolyKernel.h

| |o*StringKernel.h

| |o*WeightedCommWordStringKernel.cpp

| |o*WeightedCommWordStringKernel.h

| |o*WeightedDegreePositionStringKernel.cpp

| |o*WeightedDegreePositionStringKernel.h

| |o*WeightedDegreeStringKernel.cpp

| |o*WeightedDegreeStringKernel.h

| |o*WordMatchKernel.cpp

| |\*WordMatchKernel.h

| o+lib

| o+preproc

| o+regression

| \+structure

\*File Members