, including all inherited members.
| add_example_to_single_tree(INT idx, DREAL weight, INT tree_num) | CWeightedDegreePositionStringKernel | [protected] |
| add_example_to_tree(INT idx, DREAL weight) | CWeightedDegreePositionStringKernel | [protected, virtual] |
| add_to_normal(INT idx, DREAL weight) | CWeightedDegreePositionStringKernel | [virtual] |
| alphabet | CWeightedDegreePositionStringKernel | [protected] |
| block_computation | CWeightedDegreePositionStringKernel | [protected] |
| block_weights | CWeightedDegreePositionStringKernel | [protected] |
| block_weights_external | CWeightedDegreePositionStringKernel | [protected] |
| cache_size | CKernel | [protected] |
| CKernel(INT size) | CKernel | |
| CKernel(CFeatures *l, CFeatures *r, INT size) | CKernel | |
| cleanup() | CWeightedDegreePositionStringKernel | [virtual] |
| cleanup_POIM2() | CWeightedDegreePositionStringKernel | |
| clear_normal() | CWeightedDegreePositionStringKernel | [virtual] |
| combined_kernel_weight | CKernel | [protected] |
| compute(INT idx_a, INT idx_b) | CWeightedDegreePositionStringKernel | [protected, virtual] |
| compute_abs_weights(INT &len) | CWeightedDegreePositionStringKernel | |
| compute_batch(INT num_vec, INT *vec_idx, DREAL *target, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL factor=1.0) | CWeightedDegreePositionStringKernel | [virtual] |
| compute_batch_helper(void *p) | CWeightedDegreePositionStringKernel | [static] |
| compute_by_subkernel(INT idx, DREAL *subkernel_contrib) | CWeightedDegreePositionStringKernel | [virtual] |
| compute_by_tree(INT idx) | CWeightedDegreePositionStringKernel | [virtual] |
| compute_by_tree(INT idx, DREAL *LevelContrib) | CWeightedDegreePositionStringKernel | [virtual] |
| compute_consensus(INT &num_feat, INT num_suppvec, INT *IDX, DREAL *alphas) | CWeightedDegreePositionStringKernel | |
| compute_optimized(INT idx) | CWeightedDegreePositionStringKernel | [virtual] |
| compute_POIM(INT max_degree, INT &num_feat, INT &num_sym, DREAL *poim_result, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL *distrib) | CWeightedDegreePositionStringKernel | |
| compute_POIM2(INT max_degree, CSVM *svm) | CWeightedDegreePositionStringKernel | |
| compute_scoring(INT max_degree, INT &num_feat, INT &num_sym, DREAL *target, INT num_suppvec, INT *IDX, DREAL *weights) | CWeightedDegreePositionStringKernel | |
| compute_with_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
| compute_without_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
| compute_without_mismatch_matrix(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
| compute_without_mismatch_position_weights(CHAR *avec, DREAL *posweights_lhs, INT alen, CHAR *bvec, DREAL *posweights_rhs, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
| create_empty_tries() | CWeightedDegreePositionStringKernel | [protected] |
| CSGObject() | CSGObject | |
| CSGObject(const CSGObject &orig) | CSGObject | |
| CStringKernel(INT cachesize) | CStringKernel< ST > | |
| CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< ST > | |
| CWeightedDegreePositionStringKernel(INT size, INT degree, INT max_mismatch=0, bool use_norm=true, INT mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
| CWeightedDegreePositionStringKernel(INT size, DREAL *weights, INT degree, INT max_mismatch, INT *shift, INT shift_len, bool use_norm=true, INT mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
| CWeightedDegreePositionStringKernel(CStringFeatures< CHAR > *l, CStringFeatures< CHAR > *r, INT degree) | CWeightedDegreePositionStringKernel | |
| degree | CWeightedDegreePositionStringKernel | [protected] |
| delete_optimization() | CWeightedDegreePositionStringKernel | [virtual] |
| delete_position_weights() | CWeightedDegreePositionStringKernel | |
| delete_position_weights_lhs() | CWeightedDegreePositionStringKernel | |
| delete_position_weights_rhs() | CWeightedDegreePositionStringKernel | |
| do_precompute_matrix() | CKernel | [protected] |
| extract_w(INT max_degree, INT &num_feat, INT &num_sym, DREAL *w_result, INT num_suppvec, INT *IDX, DREAL *alphas) | CWeightedDegreePositionStringKernel | |
| get_cache_size() | CKernel | |
| get_combined_kernel_weight() | CKernel | |
| get_degree() | CWeightedDegreePositionStringKernel | |
| get_degree_weights(INT &d, INT &len) | CWeightedDegreePositionStringKernel | |
| get_feature_class() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_feature_type() | CStringKernel< ST > | [virtual] |
| get_is_initialized() | CKernel | |
| get_kernel_matrix(DREAL **dst, INT *m, INT *n) | CKernel | |
| get_kernel_matrix_real(int &m, int &n, DREAL *target) | CKernel | [virtual] |
| get_kernel_matrix_shortreal(int &m, int &n, SHORTREAL *target) | CKernel | [virtual] |
| get_kernel_type() | CWeightedDegreePositionStringKernel | [virtual] |
| get_lhs() | CKernel | |
| get_max_mismatch() | CWeightedDegreePositionStringKernel | |
| get_name() | CWeightedDegreePositionStringKernel | [virtual] |
| get_normalization_const() | CWeightedDegreePositionStringKernel | |
| get_num_subkernels() | CWeightedDegreePositionStringKernel | [virtual] |
| get_num_vec_lhs() | CKernel | |
| get_num_vec_rhs() | CKernel | |
| get_optimization_type() | CKernel | |
| get_POIM2(DREAL **poim, INT *result_len) | CWeightedDegreePositionStringKernel | |
| get_position_weights(INT &len) | CWeightedDegreePositionStringKernel | |
| get_precompute_matrix() | CKernel | |
| get_precompute_subkernel_matrix() | CKernel | |
| get_rhs() | CKernel | |
| get_subkernel_weights(INT &num_weights) | CWeightedDegreePositionStringKernel | [virtual] |
| get_use_normalization() | CWeightedDegreePositionStringKernel | |
| get_weights(INT &num_weights) | CWeightedDegreePositionStringKernel | |
| has_features() | CKernel | |
| has_property(EKernelProperty p) | CKernel | |
| init(CFeatures *l, CFeatures *r) | CWeightedDegreePositionStringKernel | [virtual] |
| init_block_weights() | CWeightedDegreePositionStringKernel | |
| init_block_weights_const() | CWeightedDegreePositionStringKernel | |
| init_block_weights_cubicpoly() | CWeightedDegreePositionStringKernel | |
| init_block_weights_exp() | CWeightedDegreePositionStringKernel | |
| init_block_weights_external() | CWeightedDegreePositionStringKernel | |
| init_block_weights_from_wd() | CWeightedDegreePositionStringKernel | |
| init_block_weights_from_wd_external() | CWeightedDegreePositionStringKernel | |
| init_block_weights_linear() | CWeightedDegreePositionStringKernel | |
| init_block_weights_log() | CWeightedDegreePositionStringKernel | |
| init_block_weights_sqpoly() | CWeightedDegreePositionStringKernel | |
| init_optimization(INT p_count, INT *IDX, DREAL *alphas) | CWeightedDegreePositionStringKernel | [virtual] |
| init_optimization(INT count, INT *IDX, DREAL *alphas, INT tree_num, INT upto_tree=-1) | CWeightedDegreePositionStringKernel | [virtual] |
| init_optimization_svm(CSVM *svm) | CKernel | |
| init_sqrt_diag(DREAL *v, INT num) | CKernel | [protected] |
| initialized | CWeightedDegreePositionStringKernel | [protected] |
| io | CSGObject | [static] |
| is_tree_initialized() | CWeightedDegreePositionStringKernel | |
| kernel(INT idx_a, INT idx_b) | CKernel | |
| kernel_matrix | CKernel | [protected] |
| length | CWeightedDegreePositionStringKernel | [protected] |
| lhs | CKernel | [protected] |
| list_kernel() | CKernel | |
| load(CHAR *fname) | CKernel | |
| load_init(FILE *src) | CWeightedDegreePositionStringKernel | [virtual] |
| m_poim | CWeightedDegreePositionStringKernel | [protected] |
| m_poim_distrib | CWeightedDegreePositionStringKernel | [protected] |
| m_poim_num_feat | CWeightedDegreePositionStringKernel | [protected] |
| m_poim_num_sym | CWeightedDegreePositionStringKernel | [protected] |
| m_poim_result_len | CWeightedDegreePositionStringKernel | [protected] |
| max_mismatch | CWeightedDegreePositionStringKernel | [protected] |
| max_shift | CWeightedDegreePositionStringKernel | [protected] |
| mkl_stepsize | CWeightedDegreePositionStringKernel | [protected] |
| normalization_const | CWeightedDegreePositionStringKernel | [protected] |
| num_block_weights_external | CWeightedDegreePositionStringKernel | [protected] |
| opt_type | CKernel | [protected] |
| optimization_initialized | CKernel | [protected] |
| parallel | CSGObject | [static] |
| poim_tries | CWeightedDegreePositionStringKernel | [protected] |
| position_mask | CWeightedDegreePositionStringKernel | [protected] |
| position_weights | CWeightedDegreePositionStringKernel | [protected] |
| position_weights_lhs | CWeightedDegreePositionStringKernel | [protected] |
| position_weights_rhs | CWeightedDegreePositionStringKernel | [protected] |
| precompute_matrix | CKernel | [protected] |
| precompute_subkernel_matrix | CKernel | [protected] |
| precomputed_matrix | CKernel | [protected] |
| prepare_POIM2(DREAL *distrib, INT num_sym, INT num_feat) | CWeightedDegreePositionStringKernel | |
| properties | CKernel | [protected] |
| remove_lhs() | CWeightedDegreePositionStringKernel | [protected, virtual] |
| remove_lhs_and_rhs() | CKernel | [virtual] |
| remove_rhs() | CKernel | [virtual] |
| rhs | CKernel | [protected] |
| save(CHAR *fname) | CKernel | |
| save_init(FILE *dest) | CWeightedDegreePositionStringKernel | [virtual] |
| seq_length | CWeightedDegreePositionStringKernel | [protected] |
| set_cache_size(INT size) | CKernel | |
| set_combined_kernel_weight(double nw) | CKernel | |
| set_is_initialized(bool p_init) | CKernel | [protected] |
| set_optimization_type(EOptimizationType t) | CKernel | [virtual] |
| set_position_weights(DREAL *position_weights, INT len=0) | CWeightedDegreePositionStringKernel | [virtual] |
| set_position_weights_lhs(DREAL *pws, INT len, INT num) | CWeightedDegreePositionStringKernel | |
| set_position_weights_rhs(DREAL *pws, INT len, INT num) | CWeightedDegreePositionStringKernel | |
| set_precompute_matrix(bool flag, bool subkernel_flag) | CKernel | [virtual] |
| set_property(EKernelProperty p) | CKernel | [protected] |
| set_shifts(INT *shifts, INT len) | CWeightedDegreePositionStringKernel | |
| set_subkernel_weights(DREAL *weights2, INT num_weights2) | CWeightedDegreePositionStringKernel | [virtual] |
| set_wd_weights() | CWeightedDegreePositionStringKernel | [virtual] |
| set_weights(DREAL *weights, INT d, INT len=0) | CWeightedDegreePositionStringKernel | [virtual] |
| shift | CWeightedDegreePositionStringKernel | [protected] |
| shift_len | CWeightedDegreePositionStringKernel | [protected] |
| tree_initialized | CWeightedDegreePositionStringKernel | [protected] |
| tries | CWeightedDegreePositionStringKernel | [protected] |
| type | CWeightedDegreePositionStringKernel | [protected] |
| unset_property(EKernelProperty p) | CKernel | [protected] |
| use_normalization | CWeightedDegreePositionStringKernel | [protected] |
| use_poim_tries | CWeightedDegreePositionStringKernel | [protected] |
| version | CSGObject | [static] |
| weights | CWeightedDegreePositionStringKernel | [protected] |
| weights_buffer | CWeightedDegreePositionStringKernel | [protected] |
| which_degree | CWeightedDegreePositionStringKernel | [protected] |
| ~CKernel() | CKernel | [virtual] |
| ~CSGObject() | CSGObject | [virtual] |
| ~CWeightedDegreePositionStringKernel() | CWeightedDegreePositionStringKernel | [virtual] |