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Defines | |
| #define | NAA 20 |
| #define | NLET 26 |
| #define | OPENING 12 |
| #define | EXTENSION 2 |
| #define | BINDEX(i, j) (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2)) |
| #define | SCALING 0.1 |
| #define | LOGP(x, y) LogSum(x,y) |
| #define | LOG0 -10000 |
| #define | INTSCALE 1000.0 |
Variables | |
| static const char * | aaList = "ARNDCQEGHILKMFPSTWYV" |
| #define BINDEX | ( | i, | |||
| j | ) | (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2)) |
Definition at line 68 of file LocalAlignmentStringKernel.cpp.
| #define EXTENSION 2 |
Definition at line 42 of file LocalAlignmentStringKernel.cpp.
| #define INTSCALE 1000.0 |
Definition at line 91 of file LocalAlignmentStringKernel.cpp.
| #define LOG0 -10000 |
Definition at line 90 of file LocalAlignmentStringKernel.cpp.
| #define LOGP | ( | x, | |||
| y | ) | LogSum(x,y) |
Definition at line 82 of file LocalAlignmentStringKernel.cpp.
| #define NAA 20 |
Definition at line 33 of file LocalAlignmentStringKernel.cpp.
| #define NLET 26 |
Definition at line 34 of file LocalAlignmentStringKernel.cpp.
| #define OPENING 12 |
Definition at line 41 of file LocalAlignmentStringKernel.cpp.
| #define SCALING 0.1 |
Definition at line 74 of file LocalAlignmentStringKernel.cpp.
const char* aaList = "ARNDCQEGHILKMFPSTWYV" [static] |
Definition at line 35 of file LocalAlignmentStringKernel.cpp.