详细描述
class IntronList
在文件IntronList.h第20行定义。
继承图，类CIntronList
公有成员 | |
| CIntronList () | |
| virtual | ~CIntronList () |
| void | init_list (int32_t *all_pos, int32_t len) |
| void | read_introns (int32_t *start_pos, int32_t *end_pos, int32_t *quality, int32_t len) |
| void | get_intron_support (int32_t *values, int32_t from_pos, int32_t to_pos) |
| virtual const char * | get_name () const |
保护属性 | |
| int32_t | m_length |
| int32_t * | m_all_pos |
| int32_t ** | m_intron_list |
| int32_t ** | m_quality_list |
构造及析构函数文档
| CIntronList | ( | ) |
constructor
在文件IntronList.cpp第12行定义。
| ~CIntronList | ( | ) | [virtual] |
在文件IntronList.cpp第20行定义。
成员函数文档
| void get_intron_support | ( | int32_t * | values, | |
| int32_t | from_pos, | |||
| int32_t | to_pos | |||
| ) |
get coverage and quality score
- 参数:
-
values values[0]: coverage of that intron; values[1]: associated quality score from_pos start position of intron to_pos end position of intron
from_pos and to_pos are indices in the all_pos list not positions in the DNA sequence
在文件IntronList.cpp第107行定义。
| virtual const char* get_name | ( | ) | const [virtual] |
| void init_list | ( | int32_t * | all_pos, | |
| int32_t | len | |||
| ) |
initialize all arrays with the number of candidate positions
- 参数:
-
all_pos list of candidate positions len number of candidate positions
在文件IntronList.cpp第31行定义。
| void read_introns | ( | int32_t * | start_pos, | |
| int32_t * | end_pos, | |||
| int32_t * | quality, | |||
| int32_t | len | |||
| ) |
read introns
- 参数:
-
start_pos array of start positions end_pos array of end positions quality quality scores for introns in list len number of items in all three previous arguments
在文件IntronList.cpp第56行定义。
成员数据文档
int32_t* m_all_pos [protected] |
index of positions in the DNA sequence
在文件IntronList.h第63行定义。
int32_t** m_intron_list [protected] |
data structure storing the introns; for all posible end positions there is a list of start positions stored
在文件IntronList.h第69行定义。
int32_t m_length [protected] |
number of positions
在文件IntronList.h第60行定义。
int32_t** m_quality_list [protected] |
data structure storing the intron quality scores; the shape is exactly the same as for the introns
在文件IntronList.h第74行定义。
该类的文档由以下文件生成：