+.scanone	arithscan
+.scanoneperm	arithscanperm
+.scantwo	arithscan
+.scantwoperm	arithscanperm
-.scanone	arithscan
-.scanoneperm	arithscanperm
-.scantwo	arithscan
-.scantwoperm	arithscanperm
A starting point	a.starting.point
addqtl	qtl-internal
adjust.rf.ri	qtl-internal
argmax.geno	argmax.geno
badorder	badorder
bayesint	bayesint
bristle3	bristle3
bristleX	bristleX
c.cross	c.cross
c.scanone	c.scanone
c.scanoneperm	c.scanoneperm
c.scantwoperm	c.scantwoperm
calc.errorlod	calc.errorlod
calc.genoprob	calc.genoprob
calc.pairprob	qtl-internal
cbind.scanoneperm	cbind.scanoneperm
checkAlleles	checkAlleles
checkcovar	qtl-internal
chrlen	chrlen
clean	qtl-internal
clean.cross	clean.cross
clean.scantwo	clean.scantwo
comparecrosses	comparecrosses
comparegeno	comparegeno
condense	qtl-internal
condense.scantwo	condense.scantwo
convert	qtl-internal
convert.scanone	convert.scanone
convert.scantwo	convert.scantwo
create.map	qtl-internal
discan	qtl-internal
drop.markers	drop.markers
drop.nullmarkers	drop.nullmarkers
dropqtl	qtl-internal
dropXcol	qtl-internal
effectplot	effectplot
effectplot.calmeanse	qtl-internal
effectplot.getmark	qtl-internal
effectscan	effectscan
est.map	est.map
est.rf	est.rf
fake.4way	fake.4way
fake.bc	fake.bc
fake.f2	fake.f2
fill.geno	fill.geno
find.flanking	find.flanking
find.marker	find.marker
find.pheno	find.pheno
find.pseudomarker	find.pseudomarker
fitqtl	fitqtl
fitstahl	fitstahl
fitstahl.este	qtl-internal
fitstahl.este.sub	qtl-internal
fitstahl.estp	qtl-internal
fitstahl.estp.sub	qtl-internal
fitstahl.estpe	qtl-internal
fitstahl.estpe.sub	qtl-internal
fixX4write	qtl-internal
fixXgeno.bc	qtl-internal
fixXgeno.f2	qtl-internal
geno.table	geno.table
getgenonames	qtl-internal
getid	qtl-internal
getsex	qtl-internal
grab.arg.names	qtl-internal
hyper	hyper
imf.cf	qtl-internal
imf.h	qtl-internal
imf.k	qtl-internal
imf.m	qtl-internal
imf.stahl	qtl-internal
jittermap	jittermap
listeria	listeria
locate.xo	qtl-internal
locatemarker	qtl-internal
lodint	lodint
makeqtl	makeqtl
makeSSmap	qtl-internal
map10	map10
max.scanone	max.scanone
max.scantwo	max.scantwo
max.scantwocondensed	qtl-internal
mf.cf	qtl-internal
mf.h	qtl-internal
mf.k	qtl-internal
mf.m	qtl-internal
mf.stahl	qtl-internal
movemarker	movemarker
nchr	summary.cross
nind	summary.cross
nmar	summary.cross
nmissing	nmissing
nphe	summary.cross
parseformula	qtl-internal
plot.cross	plot.cross
plot.errorlod	plot.errorlod
plot.geno	plot.geno
plot.info	plot.info
plot.map	plot.map
plot.missing	plot.missing
plot.pheno	plot.pheno
plot.pxg	plot.pxg
plot.rf	plot.rf
plot.scanone	plot.scanone
plot.scantwo	plot.scantwo
print.cross	qtl-internal
print.map	qtl-internal
print.scantwo	qtl-internal
print.summary.cross	qtl-internal
print.summary.fitqtl	qtl-internal
print.summary.map	qtl-internal
print.summary.ripple	qtl-internal
print.summary.scanone	qtl-internal
print.summary.scanoneperm	qtl-internal
print.summary.scantwo	qtl-internal
print.summary.scantwo.old	qtl-internal
print.summary.scantwoperm	qtl-internal
pull.geno	pull.geno
pull.map	pull.map
qtlversion	qtlversion
rbind.scanoneperm	c.scanoneperm
rbind.scantwoperm	c.scantwoperm
read.cro.qtlcart	qtl-internal
read.cross	read.cross
read.cross.csv	qtl-internal
read.cross.csvs	qtl-internal
read.cross.gary	qtl-internal
read.cross.karl	qtl-internal
read.cross.mm	qtl-internal
read.cross.qtlcart	qtl-internal
read.cross.qtx	qtl-internal
read.map.qtlcart	qtl-internal
read.maps.mm	qtl-internal
replace.map	replace.map
replaceqtl	qtl-internal
revisecovar	qtl-internal
revisescantwodf	qtl-internal
reviseXdata	qtl-internal
ripple	ripple
ripple.perm.sub	qtl-internal
ripple.perm1	qtl-internal
ripple.perm2	qtl-internal
scanone	scanone
scanone.perm	qtl-internal
scanone.perm.engine	qtl-internal
scanoneXnull	qtl-internal
scanqtl	scanqtl
scantwo	scantwo
scantwo.perm	qtl-internal
scantwo.perm.engine	qtl-internal
sim.bcg	qtl-internal
sim.cc	qtl-internal
sim.cross	sim.cross
sim.cross.4way	qtl-internal
sim.cross.bc	qtl-internal
sim.cross.f2	qtl-internal
sim.geno	sim.geno
sim.map	sim.map
sim.ril	qtl-internal
strip.partials	strip.partials
subrousummaryscantwo	qtl-internal
subset.cross	subset.cross
subset.scanone	subset.scanone
subset.scantwo	subset.scantwo
summary.cross	summary.cross
summary.fitqtl	summary.fitqtl
summary.map	summary.map
summary.ripple	summary.ripple
summary.scanone	summary.scanone
summary.scanoneperm	summary.scanoneperm
summary.scantwo	summary.scantwo
summary.scantwo.old	summary.scantwo.old
summary.scantwocondensed	qtl-internal
summary.scantwoperm	summary.scantwoperm
switch.order	switch.order
top.errorlod	top.errorlod
totmar	summary.cross
vbscan	qtl-internal
write.cross	write.cross
write.cross.csv	qtl-internal
write.cross.gary	qtl-internal
write.cross.mm	qtl-internal
write.cross.qtlcart	qtl-internal
