Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

absminDistance() (in mvpa.datasets.metric)	aggregateFeatures() (in mvpa.datasets.misc)	anova (in mvpa.measures)
Absolute() (in mvpa.misc.transformers)	algorithms (in mvpa)	applyMapper() (in Dataset)
active (in SetLogger)	all_label_counts (in MaximalVote)	asstring() (in ConfusionMatrix)
add() (in ConfusionMatrix)	analyzer (in ProxyClassifierSensitivityAnalyzer)	AUCErrorFx (in mvpa.misc.errorfx)
add() (in Collection)	analyzers (in CombinedFeaturewiseDatasetMeasure)

B

bad_classifiers (in mvpa.clfs.warehouse)	base_sensitivities (in FeaturewiseDatasetMeasure)	biases (in SMLR)
base (in mvpa)	BestDetector (in mvpa.featsel.helpers)	biases (in SMLRWeights)
base (in mvpa.clfs)	bestindex (in BestDetector)	BinaryClassifier (in mvpa.clfs.base)
base (in mvpa.datasets)	bias (in StaticDatasetMeasure)	BoostedClassifier (in mvpa.clfs.base)
base (in mvpa.featsel)	biases (in LinearSVMWeights)	BoostedClassifierSensitivityAnalyzer (in mvpa.measures.base)
base (in mvpa.mappers)	biases (in LinearSVMWeights)
base (in mvpa.measures)	biases (in LinearSVMWeights)

C

cartesianDistance() (in mvpa.datasets.metric)	CollectableAttribute (in mvpa.misc.state)	ConfusionBasedError (in mvpa.clfs.transerror)
cdf() (in Distribution)	Collection (in mvpa.misc.state)	ConfusionMatrix (in mvpa.clfs.transerror)
cdf() (in FixedDist)	collector (in mvpa.misc.state)	convergence_tol (in SMLR)
cdf() (in MCNullDist)	ColumnData (in mvpa.misc.iohelpers)	ConvergenceError (in mvpa.misc.exceptions)
chisquare() (in mvpa.misc.stats)	combined_analyzer (in BoostedClassifierSensitivityAnalyzer)	convert2SVMNode() (in mvpa.clfs.libsvm._svm)
chunks (in Dataset)	CombinedClassifier (in mvpa.clfs.base)	convertFeatureIds2FeatureMask() (in Dataset)
Classifier (in mvpa.clfs.base)	CombinedFeaturewiseDatasetMeasure (in mvpa.measures.base)	convertFeatureMask2FeatureIds() (in Dataset)
ClassifierCombiner (in mvpa.clfs.base)	combiner (in CrossValidatedTransferError)	convertOutIds2InMask() (in MaskMapper)
ClassifierError (in mvpa.clfs.transerror)	combiner (in CombinedClassifier)	convertOutIds2OutMask() (in MaskMapper)
clf (in ProxyClassifier)	compute() (in KernelConstant)	copy (in mvpa.misc)
clf (in Sensitivity)	compute() (in KernelLinear)	copy() (in mvpa.misc.copy)
clf() (in ClassifierError)	compute() (in KernelSquaredExponential)	CorrErrorFx (in mvpa.misc.errorfx)
clfs (in mvpa)	compute_log_marginal_likelihood() (in GPR)	CrossValidatedTransferError (in mvpa.algorithms.cvtranserror)
clfs (in BoostedClassifier)	compute_prediction() (in mvpa.clfs.gpr)	ctypes_helper (in mvpa.clfs.libsmlr)
clfs (in mvpa.clfs.warehouse)	confusion (in CrossValidatedTransferError)	CustomSplitter (in mvpa.datasets.splitter)
cmdline (in mvpa.misc)	confusion (in ClassifierError)	cvtranserror (in mvpa.algorithms)

D

data_generators (in mvpa.misc)	deepcopy() (in mvpa.misc.copy)	Distribution (in mvpa.clfs.stats)
Dataset (in mvpa.datasets.base)	default (in Parameter)	dochelpers (in mvpa.base)
DatasetError (in mvpa.misc.exceptions)	default_parameters (in SVMParameter)	doubleArray() (in mvpa.clfs.libsvm._svm)
DatasetMeasure (in mvpa.measures.base)	descr (in Stateful)	doubleArray2List() (in mvpa.clfs.libsvm._svm)
datasets (in mvpa)	DescreteMetric (in mvpa.datasets.metric)	dsshape (in MaskMapper)
debug (in mvpa.misc)	detrend() (in mvpa.misc.signal)	dumbFeatureBinaryDataset() (in mvpa.misc.data_generators)
debugCallback() (in mvpa.misc.cmdline)	disable() (in StateCollection)	dumbFeatureDataset() (in mvpa.misc.data_generators)
DebugLogger (in mvpa.misc.verbosity)	discardOut() (in MaskMapper)	durations (in FslEV3)

E

ElementSelector (in mvpa.featsel.helpers)	equalDefault (in Parameter)	errors (in IFS)
elementsize (in DescreteMetric)	Error (in mvpa.misc.copy)	errors (in RFE)
enable() (in StateCollection)	error() (in ConfusionMatrix)	euclidean_distance() (in Kernel)
enable() (in StateVariable)	ErrorFunction (in mvpa.misc.errorfx)	exceptions (in mvpa.misc)
enabled (in StateCollection)	ErrorFunctionBase (in mvpa.misc.errorfx)	exists() (in mvpa.base.externals)
enhancedClassDocString() (in mvpa.base.dochelpers)	errorfx (in mvpa.misc)	extend_args() (in mvpa.clfs.libsmlr.ctypes_helper)
enhancedDocString() (in mvpa.base.dochelpers)	errorfx() (in TransferError)	externals (in mvpa.base)

F

featsel (in mvpa)	FirstAxisMean() (in mvpa.misc.transformers)	forward() (in MaskMapper)
feature_ids (in Classifier)	fit() (in Distribution)	forward() (in PCAMapper)
feature_selection (in FeatureSelectionClassifier)	fit() (in FixedDist)	forward() (in SVDMapper)
feature_selections (in FeatureSelectionPipeline)	fit() (in MCNullDist)	FractionTailSelector (in mvpa.featsel.helpers)
FeatureSelection (in mvpa.featsel.base)	fit_all_weights (in SMLR)	freeDoubleArray() (in mvpa.clfs.libsvm._svm)
FeatureSelectionClassifier (in mvpa.clfs.base)	FixedDist (in mvpa.clfs.stats)	freeIntArray() (in mvpa.clfs.libsvm._svm)
FeatureSelectionPipeline (in mvpa.featsel.base)	FixedErrorThresholdStopCrit (in mvpa.featsel.helpers)	fsl (in mvpa.misc)
FeaturewiseDatasetMeasure (in mvpa.measures.base)	FixedNElementTailSelector (in mvpa.featsel.helpers)	FslEV3 (in mvpa.misc.iohelpers)
felements (in FractionTailSelector)	flobs (in mvpa.misc.fsl)	funcdata (in MelodicResults)
filter_coord (in DescreteMetric)	forward() (in Mapper)

G

gen_data() (in mvpa.clfs.gpr)	getNeighbor() (in MaskMapper)	getRho() (in SVMModel)
get_argtypes() (in mvpa.clfs.libsmlr.ctypes_helper)	getNeighborIn() (in MaskMapper)	getSensitivityAnalyzer() (in _SVM)
getBreakPoints() (in mvpa.misc.support)	getNeighbors() (in DescreteMetric)	getSensitivityAnalyzer() (in BoostedClassifier)
getEV() (in FslEV3)	getNeighbors() (in Metric)	getSensitivityAnalyzer() (in Classifier)
getInId() (in MaskMapper)	getNEVs() (in FslEV3)	getSensitivityAnalyzer() (in ProxyClassifier)
getInIds() (in MaskMapper)	getNFeatures() (in Dataset)	getSensitivityAnalyzer() (in SplitClassifier)
getInShape() (in Mapper)	getNRClass() (in SVMModel)	getSensitivityAnalyzer() (in SMLR)
getInShape() (in MaskMapper)	getNRows() (in ColumnData)	getSV() (in SVMModel)
getInShape() (in PCAMapper)	getNSamples() (in Dataset)	getSVCoef() (in SVMModel)
getInShape() (in SVDMapper)	getNSamples() (in SampleAttributes)	getSVRPdf() (in SVMModel)
getInSize() (in Mapper)	getNSV() (in SVMModel)	getSVRProbability() (in SVMModel)
getInSize() (in MaskMapper)	getOutId() (in MaskMapper)	getTotalNSV() (in SVMModel)
getInSize() (in PCAMapper)	getOutShape() (in Mapper)	getUniqueLengthNCombinations() (in mvpa.misc.support)
getInSize() (in SVDMapper)	getOutShape() (in MaskMapper)	getvalue() (in Collection)
getLabels() (in SVMModel)	getOutShape() (in PCAMapper)	getWeightedVote() (in kNN)
getMajorityVote() (in kNN)	getOutShape() (in SVDMapper)	gpr (in mvpa.clfs)
getMask() (in MaskMapper)	getOutSize() (in Mapper)	GPR (in mvpa.clfs.gpr)
getMetric() (in MetricMapper)	getOutSize() (in MaskMapper)	gradient() (in KernelSquaredExponential)
getMVPattern() (in mvpa.misc.data_generators)	getOutSize() (in PCAMapper)	GrandMean() (in mvpa.misc.transformers)
getNColumns() (in ColumnData)	getOutSize() (in SVDMapper)
getNeighbor() (in Metric)	getRandomSamples() (in Dataset)

H

HalfSplitter (in mvpa.datasets.splitter)	Harvestable (in mvpa.misc.state)	has_bias (in SMLR)
handleDocString() (in mvpa.base.dochelpers)	harvested (in Harvestable)	header_def (in McFlirtParams)
handlers (in Logger)	Harvester (in mvpa.misc.support)	helpers (in mvpa.featsel)
harvest_attribs (in Harvestable)	HarvesterCall (in mvpa.misc.support)

I

ic (in MelodicResults)	indent (in LevelLogger)	isEnabled() (in StateCollection)
icastats (in MelodicResults)	indentDoc() (in mvpa.misc.support)	isInVolume() (in mvpa.mappers.mask)
Identity() (in mvpa.misc.transformers)	intArray() (in mvpa.clfs.libsvm._svm)	isKnown() (in Collection)
idhash (in Dataset)	intArray2List() (in mvpa.clfs.libsvm._svm)	isSet (in CollectableAttribute)
idhash() (in mvpa.misc.support)	intensities (in FslEV3)	isSet() (in Collection)
idsbychunks() (in Dataset)	internals() (in Warehouse)	isSet() (in ParameterCollection)
idsbylabels() (in Dataset)	iohelpers (in mvpa.misc)	isSorted() (in mvpa.misc.support)
ifs (in mvpa.featsel)	isActive() (in StateCollection)	isTrained() (in Classifier)
IFS (in mvpa.featsel.ifs)	isDefault (in Parameter)	items (in Collection)
implementation (in SMLR)	isEnabled (in StateVariable)	items() (in Warehouse)

K

kernel (in mvpa.clfs)	KernelMatern (in mvpa.clfs.kernel)	kNN (in mvpa.clfs.knn)
Kernel (in mvpa.clfs.kernel)	KernelParameter (in mvpa.misc.param)	known_models (in mvpa.clfs.lars)
KernelConstant (in mvpa.clfs.kernel)	KernelSquaredExponential (in mvpa.clfs.kernel)	known_svm_impl (in mvpa.clfs.libsvm.svm)
KernelLinear (in mvpa.clfs.kernel)	knn (in mvpa.clfs)	known_svm_impl (in mvpa.clfs.sg.svm)

L

labels (in Dataset)	lfprev (in Logger)	LinearSVMWeights (in mvpa.clfs.sg.sens)
labels() (in ClassifierError)	libsmlr (in mvpa.clfs)	listing (in Collection)
labels() (in ConfusionMatrix)	libsvm (in mvpa.clfs)	listing() (in Warehouse)
lars (in mvpa.clfs)	LinearCSVMC (in mvpa.clfs.svm)	lm (in SMLR)
LARS (in mvpa.clfs.lars)	LinearNuSVMC (in mvpa.clfs.svm)	log_marginal_likelihood (in GPR)
level (in LevelLogger)	LinearSVMWeights (in mvpa.clfs.libsvm.sens)	Logger (in mvpa.misc.verbosity)
LevelLogger (in mvpa.misc.verbosity)	LinearSVMWeights (in mvpa.clfs.libsvm.svm)

M

mahalanobisDistance() (in mvpa.datasets.metric)	mask (in MaskMapper)	metric (in mvpa.datasets)
makeFlobs() (in mvpa.misc.fsl.flobs)	maskclf (in FeatureSelectionClassifier)	Metric (in mvpa.datasets.metric)
manhattenDistance() (in mvpa.datasets.metric)	maskeddataset (in mvpa.datasets)	metric (in mvpa.mappers)
map2Nifti() (in NiftiDataset)	MaskedDataset (in mvpa.datasets.maskeddataset)	metric (in MetricMapper)
mapForward() (in MappedDataset)	MaskMapper (in mvpa.mappers.mask)	MetricMapper (in mvpa.mappers.metric)
MapOverlap (in mvpa.misc.support)	matrices() (in ConfusionMatrix)	min_resamp (in SMLR)
MappedClassifier (in mvpa.clfs.base)	matrix() (in ConfusionMatrix)	misc (in mvpa.datasets)
mappeddataset (in mvpa.datasets)	max_log_marginal_likelihood() (in ModelSelector)	misc (in mvpa)
MappedDataset (in mvpa.datasets.mappeddataset)	MaximalVote (in mvpa.clfs.base)	mode (in ElementSelector)
mapper (in MappedClassifier)	maxiter (in SMLR)	model (in SVM)
mapper (in MappedDataset)	McFlirtParams (in mvpa.misc.iohelpers)	model_selector (in mvpa.clfs)
Mapper (in mvpa.mappers.base)	MCNullDist (in mvpa.clfs.stats)	ModelSelector (in mvpa.clfs.model_selector)
mappers (in mvpa)	MeanMismatchErrorFx (in mvpa.misc.errorfx)	MulticlassClassifier (in mvpa.clfs.base)
mapReverse() (in MappedDataset)	measures (in mvpa)	MultiStopCrit (in mvpa.featsel.helpers)
maps (in SplitFeaturewiseMeasure)	melodic (in mvpa.misc.fsl)	mvpa
mask (in mvpa.mappers)	MelodicResults (in mvpa.misc.fsl.melodic)

N

name (in mvpa.misc.copy)	nfeatures (in Mapper)	normalFeatureDataset() (in mvpa.misc.data_generators)
name (in CollectableAttribute)	NFoldSplitter (in mvpa.datasets.splitter)	normalFeatureDataset__() (in mvpa.misc.data_generators)
names (in Collection)	nic (in MelodicResults)	nsamples (in Dataset)
NBackHistoryStopCrit (in mvpa.featsel.helpers)	niftidataset (in mvpa.datasets)	nsamples (in SampleAttributes)
ndiscarded (in ElementSelector)	NiftiDataset (in mvpa.datasets.niftidataset)	NStepsStopCrit (in mvpa.featsel.helpers)
nelements (in FixedNElementTailSelector)	niftihdr (in NiftiDataset)	null_prob (in TransferError)
nevs (in FslEV3)	noiseperturbation (in mvpa.measures)	null_prob (in DatasetMeasure)
nfeatures (in Dataset)	NoisePerturbationSensitivity (in mvpa.measures.noiseperturbation)	num_threads (in SVM)
nfeatures (in FeatureSelectionPipeline)	NoneSplitter (in mvpa.datasets.splitter)

O

OddEvenSplitter (in mvpa.datasets.splitter)	optCrossfoldDegree (in mvpa.misc.cmdline)	optsPreproc (in mvpa.misc.cmdline)
offsetbydepth (in DebugLogger)	optDebug (in mvpa.misc.cmdline)	optsSVM (in mvpa.misc.cmdline)
OnceLogger (in mvpa.misc.verbosity)	optDetrend (in mvpa.misc.cmdline)	optSVMC (in mvpa.misc.cmdline)
OneMinus() (in mvpa.misc.transformers)	optHelp (in mvpa.misc.cmdline)	optSVMGamma (in mvpa.misc.cmdline)
OneWayAnova (in mvpa.measures.anova)	optKNearestDegree (in mvpa.misc.cmdline)	optSVMNu (in mvpa.misc.cmdline)
onsets (in FslEV3)	optRadius (in mvpa.misc.cmdline)	optTr (in mvpa.misc.cmdline)
optBoxLength (in mvpa.misc.cmdline)	optsBox (in mvpa.misc.cmdline)	optVerbose (in mvpa.misc.cmdline)
optBoxOffset (in mvpa.misc.cmdline)	optsChunk (in mvpa.misc.cmdline)	optZScore (in mvpa.misc.cmdline)
optChunk (in mvpa.misc.cmdline)	optsCommon (in mvpa.misc.cmdline)	owner (in Collection)
optChunkLimits (in mvpa.misc.cmdline)	optsGener (in mvpa.misc.cmdline)
optClf (in mvpa.misc.cmdline)	optsKNN (in mvpa.misc.cmdline)

P

param (in mvpa.misc)	permuteLabels() (in Dataset)	predictProbability() (in SVMModel)
param() (in SVMParameter)	plr (in mvpa.clfs)	predictValues() (in SVMModel)
Parameter (in mvpa.misc.param)	PLR (in mvpa.clfs.plr)	predictValuesRaw() (in SVMModel)
ParameterCollection (in mvpa.misc.state)	predict() (in Classifier)	printsetid (in SetLogger)
Parametrized (in mvpa.misc.state)	predict() (in SVMModel)	probabilities (in SVM)
parser (in mvpa.misc.cmdline)	predicted_variances (in GPR)	process_args() (in mvpa.clfs.libsmlr.ctypes_helper)
parseStatus() (in mvpa.misc.verbosity)	predicting_time (in Classifier)	ProxyClassifier (in mvpa.clfs.base)
path (in MelodicResults)	predictions (in Classifier)	ProxyClassifierSensitivityAnalyzer (in mvpa.measures.base)
pca (in mvpa.mappers)	predictions (in ClassifierCombiner)	pureMultivariateSignal() (in mvpa.misc.data_generators)
PCAMapper (in mvpa.mappers.pca)	predictions (in MaximalVote)	PyStringMap (in mvpa.misc.copy)
percentCorrect() (in ConfusionMatrix)	PredictionsCombiner (in mvpa.clfs.base)

R

RangeElementSelector (in mvpa.featsel.helpers)	relvar_per_ic (in MelodicResults)	reverse() (in MaskMapper)
raw_predictions (in BoostedClassifier)	remove() (in Collection)	reverse() (in PCAMapper)
raw_result (in DatasetMeasure)	resamp_decay (in SMLR)	reverse() (in SVDMapper)
raw_values (in BoostedClassifier)	reset() (in CollectableAttribute)	rfe (in mvpa.featsel)
RbfCSVMC (in mvpa.clfs.svm)	reset() (in Collection)	RFE (in mvpa.featsel.rfe)
RbfNuSVMC (in mvpa.clfs.svm)	reset() (in StateVariable)	rfesvm (in mvpa.clfs.warehouse)
register() (in SetLogger)	reset() (in Stateful)	rfesvm_split (in mvpa.clfs.warehouse)
registered (in SetLogger)	resetvalue() (in Parameter)	ridge (in mvpa.clfs)
registerMetric() (in DebugLogger)	resetvalue() (in ParameterCollection)	RidgeReg (in mvpa.clfs.ridge)
regression() (in Classifier)	retrainable (in Classifier)	RMSErrorFx (in mvpa.misc.errorfx)
RelativeTime (in mvpa.misc.verbosity)	reverse() (in Mapper)	rstUnderline() (in mvpa.base.dochelpers)

S

sample_linear_svm (in mvpa.clfs.warehouse)	set_hyperparameters() (in KernelConstant)	Splitter (in mvpa.datasets.splitter)
SampleAttributes (in mvpa.misc.iohelpers)	set_hyperparameters() (in KernelSquaredExponential)	state (in mvpa.misc)
samples (in Dataset)	setActiveFromString() (in SetLogger)	StateCollection (in mvpa.misc.state)
samplesperchunk (in Dataset)	setDefault() (in Parameter)	Stateful (in mvpa.misc.state)
samplesperlabel (in Dataset)	SetLogger (in mvpa.misc.verbosity)	StateVariable (in mvpa.misc.state)
save() (in SVMModel)	setMetric() (in MetricMapper)	StaticDatasetMeasure (in mvpa.measures.base)
searchlight (in mvpa.measures)	setNPerLabel() (in Splitter)	stats (in mvpa.clfs)
Searchlight (in mvpa.measures.searchlight)	sets (in ConfusionMatrix)	stats (in mvpa.misc)
SecondAxisMaxOfAbs() (in mvpa.misc.transformers)	setSamplesDType() (in Dataset)	steps (in NBackHistoryStopCrit)
SecondAxisSumOfAbs() (in mvpa.misc.transformers)	setTestDataset() (in FeatureSelectionClassifier)	steps (in NStepsStopCrit)
seed (in SMLR)	setvalue() (in Collection)	stepwise_regression() (in mvpa.clfs.libsmlr)
selected_ids (in FeatureSelection)	sg (in mvpa.clfs)	StoppingCriterion (in mvpa.featsel.helpers)
selectFeatures() (in Dataset)	signal (in mvpa.misc)	suite (in mvpa)
selectFeatures() (in MappedDataset)	smlr (in mvpa.clfs)	summary() (in Dataset)
selectFeaturesByMask() (in MaskedDataset)	SMLR (in mvpa.clfs.smlr)	support (in mvpa.misc)
selectOut() (in Mapper)	smlrc (in mvpa.clfs.libsmlr)	svd (in mvpa.mappers)
selectOut() (in MaskMapper)	smlrlib (in mvpa.clfs.libsmlr)	SVDMapper (in mvpa.mappers.svd)
selectOut() (in PCAMapper)	SMLRWeights (in mvpa.clfs.smlr)	svm (in mvpa.clfs.libsvm)
selectOut() (in SVDMapper)	smodes (in MelodicResults)	SVM (in mvpa.clfs.libsvm.svm)
selectSamples() (in Dataset)	solve() (in ModelSelector)	svm (in mvpa.clfs.sg)
selectSamples() (in ColumnData)	spheresizes (in Searchlight)	SVM (in mvpa.clfs.sg.svm)
sens (in mvpa.clfs.libsvm)	splitcfg() (in Splitter)	svm (in SVM)
sens (in mvpa.clfs.sg)	SplitClassifier (in mvpa.clfs.base)	svm (in mvpa.clfs)
sensitivities (in RFE)	splitDataset() (in Splitter)	SVM (in mvpa.clfs.svm)
sensitivities (in CombinedFeaturewiseDatasetMeasure)	SplitFeaturewiseMeasure (in mvpa.measures.splitmeasure)	SVMModel (in mvpa.clfs.libsvm._svm)
sensitivity (in SensitivityBasedFeatureSelection)	splitmeasure (in mvpa.measures)	SVMParameter (in mvpa.clfs.libsvm._svm)
Sensitivity (in mvpa.measures.base)	splits (in CrossValidatedTransferError)	SVMProblem (in mvpa.clfs.libsvm._svm)
SensitivityBasedFeatureSelection (in mvpa.featsel.base)	splitter (in CrossValidatedTransferError)
set_hyperparameters() (in GPR)	splitter (in mvpa.datasets)

T

TailSelector (in mvpa.featsel.helpers)	train() (in PredictionsCombiner)	training_confusion (in ClassifierError)
testAllDependencies() (in mvpa.base.externals)	train() (in Mapper)	training_confusions (in SplitClassifier)
testdataset (in FeatureSelectionClassifier)	train() (in PCAMapper)	training_time (in Classifier)
threshold (in FixedErrorThresholdStopCrit)	train() (in SVDMapper)	transerror (in CrossValidatedTransferError)
tmodes (in MelodicResults)	train2predict() (in Classifier)	transerror (in mvpa.clfs)
tofile() (in ColumnData)	traindataset (in SVM)	transerrors (in CrossValidatedTransferError)
tofile() (in FslEV3)	trained() (in Classifier)	TransferError (in mvpa.clfs.transerror)
tofile() (in McFlirtParams)	trained_dataset (in Classifier)	transformers (in mvpa.misc)
tofile() (in SampleAttributes)	trained_labels (in Classifier)	transformWithBoxcar() (in mvpa.misc.support)
tr (in MelodicResults)	training_confusion (in CrossValidatedTransferError)	truevar_per_ic (in MelodicResults)
train() (in Classifier)	training_confusion (in Classifier)	typemap (in mvpa.clfs.libsmlr.ctypes_helper)

U

uniquechunks (in Dataset)	untrain() (in ClassifierCombiner)	untrain() (in SVMParameter)
uniquelabels (in Dataset)	untrain() (in CombinedClassifier)	untrain() (in SVM)
UnknownStateError (in mvpa.misc.exceptions)	untrain() (in FeatureSelectionClassifier)	untrain() (in SVM)
untrain() (in BoostedClassifier)	untrain() (in ProxyClassifier)
untrain() (in Classifier)	untrain() (in kNN)

V

value (in Parameter)	verbose (in mvpa.misc)	vproperty (in mvpa.misc)
value (in CollectableAttribute)	verboseCallback() (in mvpa.misc.cmdline)	VProperty (in mvpa.misc.vproperty)
values (in Classifier)	verbosity (in mvpa.misc)

W

warehouse (in mvpa.clfs)	warnings_bt (in mvpa.misc)	weights (in SMLR)
Warehouse (in mvpa.clfs.warehouse)	warnings_btlevels (in mvpa.misc)	whichSet() (in ParameterCollection)
warning (in mvpa.misc)	warnings_maxcount (in mvpa.misc)	wr1996() (in mvpa.misc.data_generators)
WarningLog (in mvpa.misc)	weights (in LARS)

Z

zscore() (in mvpa.datasets.misc)

_

__add__() (in ConfusionMatrix)	__init__() (in FeaturewiseDatasetMeasure)	_copy_with_constructor() (in mvpa.misc.copy)
__add__() (in Dataset)	__init__() (in ProxyClassifierSensitivityAnalyzer)	_copy_with_copy_method() (in mvpa.misc.copy)
__call__() (in ClassifierCombiner)	__init__() (in Sensitivity)	_deepcopy_atomic() (in mvpa.misc.copy)
__call__() (in MaximalVote)	__init__() (in StaticDatasetMeasure)	_deepcopy_dict() (in mvpa.misc.copy)
__call__() (in PredictionsCombiner)	__init__() (in NoisePerturbationSensitivity)	_deepcopy_dispatch (in mvpa.misc.copy)
__call__() (in ClassifierError)	__init__() (in Searchlight)	_deepcopy_inst() (in mvpa.misc.copy)
__call__() (in Splitter)	__init__() (in SplitFeaturewiseMeasure)	_deepcopy_list() (in mvpa.misc.copy)
__call__() (in FeatureSelection)	__init__() (in WarningLog)	_deepcopy_tuple() (in mvpa.misc.copy)
__call__() (in FeatureSelectionPipeline)	__init__() (in _SingletonType)	_deepcopyclf() (in mvpa.clfs.base)
__call__() (in SensitivityBasedFeatureSelection)	__init__() (in __Singleton)	_defaultC (in mvpa.clfs.svm)
__call__() (in BestDetector)	__init__() (in ConvergenceError)	_defaultNu (in mvpa.clfs.svm)
__call__() (in ElementSelector)	__init__() (in DatasetError)	_EmptyClass (in mvpa.misc.copy)
__call__() (in FixedErrorThresholdStopCrit)	__init__() (in UnknownStateError)	_expandSampleAttribute() (in Dataset)
__call__() (in MultiStopCrit)	__init__() (in MelodicResults)	_fromFile() (in ColumnData)
__call__() (in NBackHistoryStopCrit)	__init__() (in ColumnData)	_get() (in CollectableAttribute)
__call__() (in NStepsStopCrit)	__init__() (in FslEV3)	_get() (in StateVariable)
__call__() (in RangeElementSelector)	__init__() (in McFlirtParams)	_get_implementation() (in mvpa.clfs.sg.svm)
__call__() (in StoppingCriterion)	__init__() (in SampleAttributes)	_getAttrib() (in ColumnData)
__call__() (in TailSelector)	__init__() (in Parameter)	_getDefaultC() (in _SVM)
__call__() (in IFS)	__init__() (in CollectableAttribute)	_getDefaultGamma() (in _SVM)
__call__() (in RFE)	__init__() (in Collection)	_getEnabled() (in StateCollection)
__call__() (in Mapper)	__init__() (in Harvestable)	_getFeatureIds() (in BoostedClassifier)
__call__() (in DatasetMeasure)	__init__() (in Parametrized)	_getFeatureIds() (in Classifier)
__call__() (in Sensitivity)	__init__() (in StateCollection)	_getFeatureIds() (in FeatureSelectionClassifier)
__call__() (in WarningLog)	__init__() (in StateVariable)	_getFeatureIds() (in SMLR)
__call__() (in _SingletonType)	__init__() (in Stateful)	_getFilter() (in DescreteMetric)
__call__() (in __Singleton)	__init__() (in collector)	_getHandlers() (in Logger)
__call__() (in AUCErrorFx)	__init__() (in Harvester)	_getListing() (in Collection)
__call__() (in CorrErrorFx)	__init__() (in HarvesterCall)	_getName() (in CollectableAttribute)
__call__() (in ErrorFunction)	__init__() (in MapOverlap)	_getNames() (in Collection)
__call__() (in MeanMismatchErrorFx)	__init__() (in DebugLogger)	_getNElements() (in FixedNElementTailSelector)
__call__() (in RMSErrorFx)	__init__() (in LevelLogger)	_getNElements() (in FractionTailSelector)
__call__() (in Harvester)	__init__() (in Logger)	_getNElements() (in TailSelector)
__call__() (in MapOverlap)	__init__() (in OnceLogger)	_getNSamplesPerAttr() (in Dataset)
__call__() (in DebugLogger)	__init__() (in RelativeTime)	_getOwner() (in Collection)
__call__() (in LevelLogger)	__init__() (in SetLogger)	_getRetrainable() (in Classifier)
__call__() (in Logger)	__init__() (in VProperty)	_getSampleIdsByAttr() (in Dataset)
__call__() (in OnceLogger)	__random_seed (in mvpa)	_getSplitConfig() (in CustomSplitter)
__call__() (in RelativeTime)	__repr__() (in _SVM)	_getSplitConfig() (in HalfSplitter)
__call__() (in SetLogger)	__repr__() (in BoostedClassifier)	_getSplitConfig() (in NFoldSplitter)
__check_shogun() (in mvpa.base.externals)	__repr__() (in CombinedClassifier)	_getSplitConfig() (in NoneSplitter)
__copy__() (in SVMParameter)	__repr__() (in GPR)	_getSplitConfig() (in OddEvenSplitter)
__copy__() (in ClassifierError)	__repr__() (in Kernel)	_getSplitConfig() (in Splitter)
__copy__() (in TransferError)	__repr__() (in KernelConstant)	_getuniqueattr() (in Dataset)
__deepcopy__() (in SVMParameter)	__repr__() (in KernelSquaredExponential)	_getVirtual() (in CollectableAttribute)
__deepcopy__() (in MaskMapper)	__repr__() (in kNN)	_harvest() (in Harvestable)
__deepcopy__() (in PCAMapper)	__repr__() (in LARS)	_initargs (in Stateful)
__deepcopy__() (in SVDMapper)	__repr__() (in SVMModel)	_initMask() (in MaskMapper)
__del__() (in SVMModel)	__repr__() (in SVMParameter)	_instances (in __Singleton)
__del__() (in _SVMCParameter)	__repr__() (in SVMProblem)	_keep_alive() (in mvpa.misc.copy)
__del__() (in SVMParameter)	__repr__() (in PLR)	_KERNELS (in SVM)
__del__() (in SVMProblem)	__repr__() (in RidgeReg)	_KERNELS (in SVM)
__del__() (in Logger)	__repr__() (in SVM)	_KNOWN (in mvpa.base.externals)
__detrend_regress() (in mvpa.misc.signal)	__repr__() (in Dataset)	_known_collections (in mvpa.misc.state)
__doc__ (in ClassifierError)	__repr__() (in FixedNElementTailSelector)	_KNOWN_COPY_METHODS (in Harvestable)
__doc__ (in ConfusionBasedError)	__repr__() (in FractionTailSelector)	_KNOWN_INTERNALS (in mvpa.clfs.warehouse)
__doc__ (in TransferError)	__repr__() (in Sensitivity)	_KNOWN_KERNEL_PARAMS (in SVM)
__doc__ (in NFoldSplitter)	__repr__() (in Parametrized)	_KNOWN_KERNEL_PARAMS (in SVM)
__doc__ (in Mapper)	__repr__() (in Stateful)	_known_metrics (in DebugLogger)
__doc__ (in MaskMapper)	__set__() (in VProperty)	_known_modes (in NoneSplitter)
__doc__ (in MetricMapper)	__setattr__() (in Collection)	_KNOWN_PARAMS (in SVM)
__doc__ (in PCAMapper)	__setattr__() (in Stateful)	_KNOWN_PARAMS (in SVM)
__doc__ (in SVDMapper)	__sg_helper() (in LinearSVMWeights)	_label2oneofm() (in mvpa.clfs.smlr)
__doc__ (in DatasetMeasure)	__Singleton (in mvpa.misc)	_NuSVM (in mvpa.clfs.svm)
__doc__ (in Searchlight)	__slotnames__ (in StateCollection)	_postcall() (in ClassifierError)
__f() (in PLR)	__slotnames__ (in StateVariable)	_postcall() (in TransferError)
__get__() (in VProperty)	__str__() (in BinaryClassifier)	_postcall() (in DatasetMeasure)
__getattribute__() (in Collection)	__str__() (in Classifier)	_postcall() (in FeaturewiseDatasetMeasure)
__getattribute__() (in Stateful)	__str__() (in kNN)	_postpredict() (in Classifier)
__getitem__() (in Warehouse)	__str__() (in SVMParameter)	_posttrain() (in BoostedClassifier)
__getitem__() (in Collection)	__str__() (in ConfusionMatrix)	_posttrain() (in Classifier)
__iadd__() (in ConfusionMatrix)	__str__() (in Dataset)	_precall() (in ClassifierError)
__iadd__() (in Warehouse)	__str__() (in CustomSplitter)	_predict() (in BinaryClassifier)
__iadd__() (in Dataset)	__str__() (in HalfSplitter)	_predict() (in BoostedClassifier)
__iadd__() (in ColumnData)	__str__() (in NFoldSplitter)	_predict() (in Classifier)
__init__() (in CrossValidatedTransferError)	__str__() (in NoneSplitter)	_predict() (in CombinedClassifier)
__init__() (in _SVM)	__str__() (in OddEvenSplitter)	_predict() (in FeatureSelectionClassifier)
__init__() (in BinaryClassifier)	__str__() (in Splitter)	_predict() (in MappedClassifier)
__init__() (in BoostedClassifier)	__str__() (in MaskMapper)	_predict() (in ProxyClassifier)
__init__() (in Classifier)	__str__() (in DatasetMeasure)	_predict() (in GPR)
__init__() (in ClassifierCombiner)	__str__() (in DatasetError)	_predict() (in kNN)
__init__() (in CombinedClassifier)	__str__() (in UnknownStateError)	_predict() (in LARS)
__init__() (in FeatureSelectionClassifier)	__str__() (in ColumnData)	_predict() (in SVM)
__init__() (in MappedClassifier)	__str__() (in Parameter)	_predict() (in PLR)
__init__() (in MaximalVote)	__str__() (in CollectableAttribute)	_predict() (in RidgeReg)
__init__() (in MulticlassClassifier)	__str__() (in Collection)	_predict() (in SVM)
__init__() (in ProxyClassifier)	__str__() (in Parametrized)	_predict() (in SMLR)
__init__() (in SplitClassifier)	__str__() (in StateVariable)	_prepredict() (in Classifier)
__init__() (in GPR)	__str__() (in Stateful)	_pretrain() (in Classifier)
__init__() (in Kernel)	__warned (in kNN)	_pythonStepwiseRegression() (in SMLR)
__init__() (in KernelConstant)	__wasChanged() (in SVM)	_reconstruct() (in mvpa.misc.copy)
__init__() (in KernelMatern)	_action() (in Collection)	_register_properties() (in SVMParameter)
__init__() (in KernelSquaredExponential)	_ATTRIBUTE_COLLECTIONS (in _SVM)	_registerAttribute() (in Dataset)
__init__() (in kNN)	_call() (in CrossValidatedTransferError)	_registeredattributes (in Dataset)
__init__() (in LARS)	_call() (in LinearSVMWeights)	_regressionIsBogus() (in Classifier)
__init__() (in SVMModel)	_call() (in LinearSVMWeights)	_requiredattributes (in Dataset)
__init__() (in _SVMCParameter)	_call() (in LinearSVMWeights)	_resetallunique() (in Dataset)
__init__() (in SVMParameter)	_call() (in SMLRWeights)	_resetEnabledTemporarily() (in StateCollection)
__init__() (in SVMProblem)	_call() (in ClassifierError)	_set() (in Parameter)
__init__() (in LinearSVMWeights)	_call() (in ConfusionBasedError)	_set() (in CollectableAttribute)
__init__() (in LinearSVMWeights)	_call() (in TransferError)	_set() (in StateVariable)
__init__() (in SVM)	_call() (in OneWayAnova)	_setActive() (in SetLogger)
__init__() (in ModelSelector)	_call() (in BoostedClassifierSensitivityAnalyzer)	_setAnalyzers() (in CombinedFeaturewiseDatasetMeasure)
__init__() (in PLR)	_call() (in CombinedFeaturewiseDatasetMeasure)	_setAttribs() (in Harvestable)
__init__() (in RidgeReg)	_call() (in DatasetMeasure)	_setClassifier() (in Sensitivity)
__init__() (in LinearSVMWeights)	_call() (in FeaturewiseDatasetMeasure)	_setClassifiers() (in BoostedClassifier)
__init__() (in SVM)	_call() (in ProxyClassifierSensitivityAnalyzer)	_setdataattr() (in Dataset)
__init__() (in SMLR)	_call() (in StaticDatasetMeasure)	_setdebug() (in mvpa.clfs.sg.svm)
__init__() (in SMLRWeights)	_call() (in NoisePerturbationSensitivity)	_setEnabled() (in StateCollection)
__init__() (in Distribution)	_call() (in Searchlight)	_setFElements() (in FractionTailSelector)
__init__() (in FixedDist)	_call() (in SplitFeaturewiseMeasure)	_setFilter() (in DescreteMetric)
__init__() (in MCNullDist)	_caught_exceptions (in mvpa.base.externals)	_setHandlers() (in Logger)
__init__() (in LinearCSVMC)	_changeTemporarily() (in StateCollection)	_setIndent() (in LevelLogger)
__init__() (in LinearNuSVMC)	_check() (in ColumnData)	_setLevel() (in LevelLogger)
__init__() (in RbfCSVMC)	_checkData() (in Dataset)	_setMode() (in ElementSelector)
__init__() (in RbfNuSVMC)	_checkIndex() (in Collection)	_setName() (in CollectableAttribute)
__init__() (in ClassifierError)	_clear_svmc_params() (in SVMParameter)	_setNElements() (in FixedNElementTailSelector)
__init__() (in ConfusionBasedError)	_clf_internals (in _SVM)	_setOffsetByDepth() (in DebugLogger)
__init__() (in ConfusionMatrix)	_clf_internals (in Classifier)	_setOwner() (in Collection)
__init__() (in TransferError)	_clf_internals (in FeatureSelectionClassifier)	_setParameter() (in SVMParameter)
__init__() (in Warehouse)	_clf_internals (in GPR)	_setPrintsetid() (in SetLogger)
__init__() (in Dataset)	_clf_internals (in kNN)	_setRetrainable() (in Classifier)
__init__() (in MappedDataset)	_clf_internals (in LARS)	_setTail() (in TailSelector)
__init__() (in MaskedDataset)	_clf_internals (in SVM)	_setVirtual() (in CollectableAttribute)
__init__() (in DescreteMetric)	_clf_internals (in SMLR)	_shapeSamples() (in Dataset)
__init__() (in NiftiDataset)	_closeOpenedHandlers() (in Logger)	_SingletonType (in mvpa.misc)
__init__() (in CustomSplitter)	_col2class (in mvpa.misc.state)	_STATS_DESCRIPTION (in ConfusionMatrix)
__init__() (in HalfSplitter)	_collections_order (in mvpa.misc.state)	_SVM (in mvpa.clfs._svmbase)
__init__() (in NFoldSplitter)	_collections_template (in FeatureSelection)	_svm (in mvpa.clfs.libsvm)
__init__() (in NoneSplitter)	_collections_template (in FeatureSelectionPipeline)	_SVM_PARAMS (in _SVM)
__init__() (in OddEvenSplitter)	_collections_template (in SensitivityBasedFeatureSelection)	_svmbase (in mvpa.clfs)
__init__() (in Splitter)	_collections_template (in ElementSelector)	_SVMCParameter (in SVMParameter)
__init__() (in FeatureSelection)	_collections_template (in FixedNElementTailSelector)	_test() (in mvpa.misc.copy)
__init__() (in FeatureSelectionPipeline)	_collections_template (in FractionTailSelector)	_tosg() (in mvpa.clfs.sg.svm)
__init__() (in SensitivityBasedFeatureSelection)	_collections_template (in RangeElementSelector)	_train() (in BinaryClassifier)
__init__() (in BestDetector)	_collections_template (in TailSelector)	_train() (in BoostedClassifier)
__init__() (in ElementSelector)	_collections_template (in IFS)	_train() (in Classifier)
__init__() (in FixedErrorThresholdStopCrit)	_collections_template (in OneWayAnova)	_train() (in CombinedClassifier)
__init__() (in FixedNElementTailSelector)	_collections_template (in BoostedClassifierSensitivityAnalyzer)	_train() (in FeatureSelectionClassifier)
__init__() (in FractionTailSelector)	_collections_template (in CombinedFeaturewiseDatasetMeasure)	_train() (in MappedClassifier)
__init__() (in MultiStopCrit)	_collections_template (in DatasetMeasure)	_train() (in MulticlassClassifier)
__init__() (in NBackHistoryStopCrit)	_collections_template (in FeaturewiseDatasetMeasure)	_train() (in ProxyClassifier)
__init__() (in NStepsStopCrit)	_collections_template (in ProxyClassifierSensitivityAnalyzer)	_train() (in SplitClassifier)
__init__() (in RangeElementSelector)	_collections_template (in Sensitivity)	_train() (in GPR)
__init__() (in TailSelector)	_collections_template (in StaticDatasetMeasure)	_train() (in kNN)
__init__() (in IFS)	_collections_template (in NoisePerturbationSensitivity)	_train() (in LARS)
__init__() (in RFE)	_collections_template (in Searchlight)	_train() (in SVM)
__init__() (in Mapper)	_collections_template (in SplitFeaturewiseMeasure)	_train() (in PLR)
__init__() (in MaskMapper)	_collections_template (in Harvestable)	_train() (in RidgeReg)
__init__() (in MetricMapper)	_collections_template (in Stateful)	_train() (in SVM)
__init__() (in PCAMapper)	_compute() (in ConfusionMatrix)	_train() (in SMLR)
__init__() (in SVDMapper)	_computeFilter() (in DescreteMetric)	_uniqueattributes (in Dataset)
__init__() (in OneWayAnova)	_copy_dispatch (in mvpa.misc.copy)	_updateOwner() (in Collection)
__init__() (in BoostedClassifierSensitivityAnalyzer)	_copy_immutable() (in mvpa.misc.copy)	_VERIFIED (in mvpa.base.externals)
__init__() (in CombinedFeaturewiseDatasetMeasure)	_copy_inst() (in mvpa.misc.copy)
__init__() (in DatasetMeasure)	_copy_states_() (in StateCollection)

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