| BaseCallingProgramGroup |
Tools that process sequencing machine data, e.g.
|
| DiagnosticsAndQCProgramGroup |
Tools that collect sequencing quality-related and comparative metrics
|
| IntervalsManipulationProgramGroup |
Tools that process genomic intervals in various formats.
|
| OtherProgramGroup |
Miscellaneous tools, e.g.
|
| ReadDataManipulationProgramGroup |
Tools that manipulate read data in SAM, BAM or CRAM format
|
| ReferenceProgramGroup |
Tools that analyze and manipulate FASTA format references
|
| Testing |
For internal test purposes only.
|
| VariantEvaluationProgramGroup |
Tools that evaluate and refine variant calls, e.g.
|
| VariantFilteringProgramGroup |
Tools that filter variants
|
| VariantManipulationProgramGroup |
Tools that manipulate variant call format (VCF) data
|