picard.fingerprint

Class GenotypeReader.VariantIterator

java.lang.Object

picard.fingerprint.GenotypeReader.VariantIterator

All Implemented Interfaces:

CloseableIterator<VariantContext>, Closeable, AutoCloseable, Iterator<VariantContext>

Enclosing class:

GenotypeReader

public abstract static class GenotypeReader.VariantIterator
extends Object
implements CloseableIterator<VariantContext>

Small class to encapsulate an iterator over variants, optionally with a sequence dictionary.

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	VariantIterator(SAMSequenceDictionary dictionary, Object header)

Method Summary

Modifier and Type	Method and Description
Object	getHeader()
SAMSequenceDictionary	getSequenceDictionary()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.util.CloseableIterator

close

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, next, remove

Constructor Detail

VariantIterator

protected VariantIterator(SAMSequenceDictionary dictionary,
                          Object header)

Method Detail

getSequenceDictionary

public SAMSequenceDictionary getSequenceDictionary()

getHeader

public Object getHeader()