Uses of Class
picard.annotation.Gene

Packages that use Gene

Package	Description
picard.analysis.directed
picard.annotation

Uses of Gene in picard.analysis.directed

Constructor parameters in picard.analysis.directed with type arguments of type Gene

Constructor and Description

RnaSeqMetricsCollector(Set<MetricAccumulationLevel> accumulationLevels, List<SAMReadGroupRecord> samRgRecords, Long ribosomalBasesInitialValue, OverlapDetector<Gene> geneOverlapDetector, OverlapDetector<Interval> ribosomalSequenceOverlapDetector, HashSet<Integer> ignoredSequenceIndices, int minimumLength, RnaSeqMetricsCollector.StrandSpecificity strandSpecificity, double rrnaFragmentPercentage, boolean collectCoverageStatistics)

Uses of Gene in picard.annotation

Methods in picard.annotation that return Gene

Modifier and Type	Method and Description
Gene	Gene.Transcript.getGene()

Methods in picard.annotation that return types with arguments of type Gene

Modifier and Type	Method and Description
static OverlapDetector<Gene>	GeneAnnotationReader.loadRefFlat(File refFlatFile, SAMSequenceDictionary sequenceDictionary)

Methods in picard.annotation with parameters of type Gene

Modifier and Type	Method and Description
int	Gene.compareTo(Gene that)