uk.ac.cam.ch.wwmm.opsin

Class FragmentTest

java.lang.Object

uk.ac.cam.ch.wwmm.opsin.FragmentTest

public class FragmentTest
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
FragmentTest()

Method Summary

Modifier and Type	Method and Description
void	setUp()
void	testAddAtom()
void	testAddBond()
void	testConvertSpareValenciesToDoubleBonds()
void	testFindBond()
void	testFragment()
void	testGetAtomByID()
void	testGetAtomByLocant()
void	testGetAtomNeighbours()
void	testGetChainLength()
void	testGetIDFromLocant()
void	testImportFrag()
void	testImportFragWithIntraFragBonds1()
void	testImportFragWithIntraFragBonds2()
void	testIndicatedHydrogen()
void	testIsCharacteristicAtomAldehyde()
void	testIsCharacteristicAtomFunctionalAtom()
void	testIsCharacteristicAtomHydroxy()
void	testIsCharacteristicAtomSuffix()
void	testLabelAcetoanilide()
void	testLabelCarbamimidamido()
void	testLabelCarbonicDihydrazide()
void	testLabelCarbonimidoyl()
void	testLabelCarboximidohydrazide()
void	testLabelDiimidooxalicDiamide()
void	testLabelHexanDiamide()
void	testLabelHydrazinecarbohydrazide()
void	testLabelHydrazonate()
void	testLabelHydrazonicAmide()
void	testLabelHydrazonoHydrazide()
void	testLabelPiperazine()
void	testLabelPyridine()
void	testLabelSulfonoThioate()
void	testRelabelSuffixLocants()
void	testSpareValenciesOnAromaticAtoms()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FragmentTest

public FragmentTest()

Method Detail

setUp

public void setUp()

testFragment

public void testFragment()

testAddAtom

public void testAddAtom()

testAddBond

public void testAddBond()

testImportFrag

public void testImportFrag()
                    throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testImportFragWithIntraFragBonds1

public void testImportFragWithIntraFragBonds1()
                                       throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testImportFragWithIntraFragBonds2

public void testImportFragWithIntraFragBonds2()
                                       throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testGetIDFromLocant

public void testGetIDFromLocant()

testGetAtomByLocant

public void testGetAtomByLocant()

testGetAtomByID

public void testGetAtomByID()

testFindBond

public void testFindBond()

testGetChainLength

public void testGetChainLength()

testRelabelSuffixLocants

public void testRelabelSuffixLocants()
                              throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelCarbamimidamido

public void testLabelCarbamimidamido()
                              throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelHydrazonoHydrazide

public void testLabelHydrazonoHydrazide()
                                 throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelCarbonimidoyl

public void testLabelCarbonimidoyl()
                            throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelHydrazonicAmide

public void testLabelHydrazonicAmide()
                              throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelHydrazonate

public void testLabelHydrazonate()
                          throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelHexanDiamide

public void testLabelHexanDiamide()
                           throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelDiimidooxalicDiamide

public void testLabelDiimidooxalicDiamide()
                                   throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelHydrazinecarbohydrazide

public void testLabelHydrazinecarbohydrazide()
                                      throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelCarbonicDihydrazide

public void testLabelCarbonicDihydrazide()
                                  throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelSulfonoThioate

public void testLabelSulfonoThioate()
                             throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelAcetoanilide

public void testLabelAcetoanilide()
                           throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelPyridine

public void testLabelPyridine()
                       throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelPiperazine

public void testLabelPiperazine()
                         throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testLabelCarboximidohydrazide

public void testLabelCarboximidohydrazide()
                                   throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testIndicatedHydrogen

public void testIndicatedHydrogen()
                           throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testSpareValenciesOnAromaticAtoms

public void testSpareValenciesOnAromaticAtoms()
                                       throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testConvertSpareValenciesToDoubleBonds

public void testConvertSpareValenciesToDoubleBonds()
                                            throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testGetAtomNeighbours

public void testGetAtomNeighbours()
                           throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testIsCharacteristicAtomSuffix

public void testIsCharacteristicAtomSuffix()
                                    throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testIsCharacteristicAtomAldehyde

public void testIsCharacteristicAtomAldehyde()
                                      throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testIsCharacteristicAtomFunctionalAtom

public void testIsCharacteristicAtomFunctionalAtom()
                                            throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

testIsCharacteristicAtomHydroxy

public void testIsCharacteristicAtomHydroxy()
                                     throws uk.ac.cam.ch.wwmm.opsin.StructureBuildingException

Throws:

uk.ac.cam.ch.wwmm.opsin.StructureBuildingException