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nipype.algorithms.modelgen
==========================


:class:`SpecifyModel`
---------------------


Makes a model specification

Parameters
~~~~~~~~~~
inputs : dict
    key, value pairs that will update the SpecifyModel.inputs
    attributes. See self.inputs_help() for a list attributes.

Attributes
~~~~~~~~~~
inputs : :class:`nipype.interfaces.base.Bunch`
    Options that can be passed to spm_spm via a job structure
cmdline : str
    String used to call matlab/spm via SpmMatlabCommandLine
    interface

Other Parameters
~~~~~~~~~~~~~~~~
To see optional arguments SpecifyModel().inputs_help()

Inputs:: 

	[Mandatory]
	functional_runs : (a list of items which are an existing file name or an existing file name)
		Data files for model. List of 4D files or list oflist of 3D files per session
	input_units : ('secs' or 'scans')
		Units of event onsets and durations (secs or scans)
	output_units : ('secs' or 'scans')
		Units of design event onsets and durations (secs or scans)
	subject_id : (a string or an integer)
		Subject identifier used as a parameter to the subject_info_func.
	subject_info : (a list of items which are any value)
		List subject specific condition information
	time_repetition : (a float)
		Time between the start of one volume to the start of the next image volume.

	[Optional]
	concatenate_runs : (a boolean)
		Concatenating all runs to look like a single session.
	high_pass_filter_cutoff : (a float)
		High-pass filter cutoff in secs
	is_sparse : (a boolean)
		indicates whether paradigm is sparse
	model_hrf : (a boolean)
		model sparse events with hrf
	outlier_files : (an existing file name)
		Files containing scan outlier indices that should be tossed
	realignment_parameters : (an existing file name)
		Realignment parameters returned by motion correction algorithm
	scan_onset : (a float)
		Start of scanning relative to onset of run in secs
	stimuli_as_impulses : (a boolean)
		Treat each stimulus to be impulse like.
	time_acquisition : (a float)
		Time in seconds to acquire a single image volume
	volumes_in_cluster : (an integer >= 0)
		Number of scan volumes in a cluster


Outputs:: 

	session_info	session info for level1designs
