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nipype.algorithms.misc
======================


:class:`PickAtlas`
------------------


Returns ROI masks given an atlas and a list of labels. Supports dilation
and left right masking (assuming the atlas is properly aligned).

Inputs:: 

	[Optional]
	atlas : (an existing file name)
		Location of the atlas that will be used.
	dilation_size : (an integer)
		Defines how much the mask will be dilated (expanded in 3D).
	hemi : ('both' or 'left' or 'right')
		Restrict the mask to only one hemisphere: left or right
	labels : (an integer or a list of items which are an integer)
		Labels of regions that will be included in the mask. Must be compatible with the atlas used.
	output_file : (a file name)
		Where to store the output mask.


Outputs:: 

	mask_file : (an existing file name)
		output mask file

:class:`SimpleThreshold`
------------------------




Inputs:: 

	[Mandatory]
	threshold : (a float)
		volumes to be thresholdedeverything below this value will be set to zero
	volumes : (an existing file name)
		volumes to be thresholded

	


Outputs:: 

	thresholded_volumes : (an existing file name)
		thresholded volumes
