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API
ΒΆ
Release:
0.1
Date:
August 09, 2010
algorithms.diagnostics.screens
Module:
algorithms.diagnostics.screens
Functions
algorithms.diagnostics.timediff
Module:
algorithms.diagnostics.timediff
algorithms.diagnostics.tsdiffplot
Module:
algorithms.diagnostics.tsdiffplot
Functions
algorithms.fwhm
Module:
algorithms.fwhm
Classes
ReselImage
Resels
algorithms.interpolation
Module:
algorithms.interpolation
ImageInterpolator
algorithms.kernel_smooth
Module:
algorithms.kernel_smooth
Class
LinearFilter
Functions
algorithms.resample
Module:
algorithms.resample
Functions
algorithms.statistics.classification
Module:
algorithms.statistics.classification
Classifier
algorithms.statistics.nlsmodel
Module:
algorithms.statistics.nlsmodel
NLSModel
algorithms.statistics.onesample
Module:
algorithms.statistics.onesample
Functions
algorithms.statistics.regression
Module:
algorithms.statistics.regression
Classes
AREstimator
ArrayOutput
RegressionOutput
RegressionOutputList
TOutput
Functions
algorithms.statistics.rft
Module:
algorithms.statistics.rft
Classes
ChiBarSquared
ChiSquared
ECcone
ECquasi
FStat
Hotelling
IntrinsicVolumes
MultilinearForm
OneSidedF
Roy
TStat
fnsum
Functions
algorithms.statistics.utils
Module:
algorithms.statistics.utils
Functions
core.image.affine_image
Module:
core.image.affine_image
AffineImage
core.image.generators
Module:
core.image.generators
Functions
core.image.image
Module:
core.image.image
Classes
Image
SliceMaker
Functions
core.image.image_list
Module:
core.image.image_list
ImageList
core.image.roi
Module:
core.image.roi
Classes
ContinuousROI
CoordinateMapROI
DiscreteROI
ROI
ROISequence
ROIall
Functions
core.image.xyz_image
Module:
core.image.xyz_image
Classes
XYZImage
XYZTransform
Function
core.reference.array_coords
Module:
core.reference.array_coords
Classes
ArrayCoordMap
Grid
core.reference.coordinate_map
Module:
core.reference.coordinate_map
Common API
Operations on mappings (module level functions)
Classes
AffineTransform
CoordinateMap
Functions
core.reference.coordinate_system
Module:
core.reference.coordinate_system
Class
CoordinateSystem
Functions
core.reference.slices
Module:
core.reference.slices
Functions
core.transforms.affines
Module:
core.transforms.affines
Functions
interfaces.matlab
Module:
interfaces.matlab
Functions
interfaces.spm
Module:
interfaces.spm
Class
SpmInfo
Functions
io.files
Module:
io.files
Examples
Functions
io.imageformats.analyze
Module:
io.imageformats.analyze
Header checking
Classes
AnalyzeHeader
AnalyzeImage
io.imageformats.batteryrunners
Module:
io.imageformats.batteryrunners
Classes
BatteryRunner
Report
io.imageformats.binaryheaders
Module:
io.imageformats.binaryheaders
BinaryHeader
io.imageformats.compat
Module:
io.imageformats.compat
NiftiImage
io.imageformats.eulerangles
Module:
io.imageformats.eulerangles
Functions
io.imageformats.filename_parser
Module:
io.imageformats.filename_parser
Class
TypesFilenamesError
Functions
io.imageformats.filetuples
Module:
io.imageformats.filetuples
Classes
FileTuples
FileTuplesError
io.imageformats.funcs
Module:
io.imageformats.funcs
Functions
io.imageformats.header_ufuncs
Module:
io.imageformats.header_ufuncs
Functions
io.imageformats.headers
Module:
io.imageformats.headers
Header
io.imageformats.loadsave
Module:
io.imageformats.loadsave
Functions
io.imageformats.minc
Module:
io.imageformats.minc
Classes
MincError
MincHeader
MincImage
netcdf_fileobj
io.imageformats.nifti1
Module:
io.imageformats.nifti1
Classes
Nifti1Extension
Nifti1Extensions
Nifti1Header
Nifti1Image
io.imageformats.orientations
Module:
io.imageformats.orientations
Class
OrientationError
Functions
io.imageformats.quaternions
Module:
io.imageformats.quaternions
Functions
io.imageformats.spatialimages
Module:
io.imageformats.spatialimages
There are several ways of writing data.
SpatialImage
io.imageformats.spm2analyze
Module:
io.imageformats.spm2analyze
Classes
Spm2AnalyzeHeader
Spm2AnalyzeImage
io.imageformats.spm99analyze
Module:
io.imageformats.spm99analyze
Classes
Spm99AnalyzeHeader
Spm99AnalyzeImage
SpmAnalyzeHeader
io.imageformats.testing.lightunit
Module:
io.imageformats.testing.lightunit
Authors
io.imageformats.testing.nosepatch
Module:
io.imageformats.testing.nosepatch
io.imageformats.volumeutils
Module:
io.imageformats.volumeutils
Classes
HeaderDataError
HeaderTypeError
Recoder
UnsupportedDataType
Functions
io.nifti_ref
Module:
io.nifti_ref
Axes:
Functions
modalities.fmri.design
Module:
modalities.fmri.design
Functions
modalities.fmri.fmri
Module:
modalities.fmri.fmri
FmriImageList
modalities.fmri.fmristat.delay
Module:
modalities.fmri.fmristat.delay
Contrast
modalities.fmri.fmristat.hrf
Module:
modalities.fmri.fmristat.hrf
References
Functions
modalities.fmri.fmristat.invert
Module:
modalities.fmri.fmristat.invert
modalities.fmri.fmristat.model
Module:
modalities.fmri.fmristat.model
Classes
AR1
ModelOutputImage
OLS
Functions
modalities.fmri.fmristat.utils
Module:
modalities.fmri.fmristat.utils
WholeBrainNormalize
modalities.fmri.formula
Module:
modalities.fmri.formula
Formula objects
Classes
Beta
Factor
FactorTerm
Formula
RandomEffects
Term
Functions
modalities.fmri.hrf
Module:
modalities.fmri.hrf
Functions
modalities.fmri.pca
Module:
modalities.fmri.pca
Functions
modalities.fmri.spm.correlation
Module:
modalities.fmri.spm.correlation
Functions
modalities.fmri.spm.model
Module:
modalities.fmri.spm.model
Class
SecondStage
Functions
modalities.fmri.spm.reml
Module:
modalities.fmri.spm.reml
Functions
modalities.fmri.spm.trace
Module:
modalities.fmri.spm.trace
modalities.fmri.utils
Module:
modalities.fmri.utils
Functions
neurospin.clustering.bgmm
Module:
neurospin.clustering.bgmm
Classes
BGMM
VBGMM
Functions
neurospin.clustering.bootstrap_hc
Module:
neurospin.clustering.bootstrap_hc
Functions
neurospin.clustering.clustering
Module:
neurospin.clustering.clustering
Functions
neurospin.clustering.ggmixture
Module:
neurospin.clustering.ggmixture
Classes
GGGM
GGM
Gamma
neurospin.clustering.gmm
Module:
neurospin.clustering.gmm
Classes
GMM
grid_descriptor
Functions
neurospin.clustering.hierarchical_clustering
Module:
neurospin.clustering.hierarchical_clustering
Class
WeightedForest
Functions
neurospin.datasets.converters
Module:
neurospin.datasets.converters
Functions
neurospin.datasets.transforms.affine_transform
Module:
neurospin.datasets.transforms.affine_transform
AffineTransform
neurospin.datasets.transforms.affine_utils
Module:
neurospin.datasets.transforms.affine_utils
Functions
neurospin.datasets.transforms.transform
Module:
neurospin.datasets.transforms.transform
Classes
CompositionError
Transform
neurospin.datasets.volumes.volume_data
Module:
neurospin.datasets.volumes.volume_data
VolumeData
neurospin.datasets.volumes.volume_field
Module:
neurospin.datasets.volumes.volume_field
VolumeField
neurospin.datasets.volumes.volume_grid
Module:
neurospin.datasets.volumes.volume_grid
VolumeGrid
neurospin.datasets.volumes.volume_img
Module:
neurospin.datasets.volumes.volume_img
VolumeImg
neurospin.eda.dimension_reduction
Module:
neurospin.eda.dimension_reduction
Classes
MDS
NLDR
PCA
eps_Isomap
knn_Isomap
knn_LE
knn_LPP
Functions
neurospin.glm.glm
Module:
neurospin.glm.glm
Classes
contrast
glm
Functions
neurospin.graph.BPmatch
Module:
neurospin.graph.BPmatch
Functions
neurospin.graph.field
Module:
neurospin.graph.field
Field
neurospin.graph.forest
Module:
neurospin.graph.forest
Forest
neurospin.graph.graph
Module:
neurospin.graph.graph
Classes
BipartiteGraph
Graph
WeightedGraph
Function
neurospin.group.displacement_field
Module:
neurospin.group.displacement_field
Classes
displacement_field
gaussian_random_field
Functions
neurospin.group.permutation_test
Module:
neurospin.group.permutation_test
Classes
permutation_test
permutation_test_onesample
permutation_test_onesample_graph
permutation_test_twosample
Functions
neurospin.group.spatial_relaxation_onesample
Module:
neurospin.group.spatial_relaxation_onesample
Class
multivariate_stat
Functions
neurospin.image.image
Module:
neurospin.image.image
Classes
Image
MaskedImage
Functions
neurospin.registration.affine
Module:
neurospin.registration.affine
Classes
Affine
Rigid
Similarity
Functions
neurospin.registration.grid_transform
Module:
neurospin.registration.grid_transform
Classes
GridTransform
SplineTransform
neurospin.registration.iconic_registration
Module:
neurospin.registration.iconic_registration
Class
IconicRegistration
Functions
neurospin.registration.registration
Module:
neurospin.registration.registration
Class
FmriRealign4d
Functions
neurospin.registration.spacetime_registration
Module:
neurospin.registration.spacetime_registration
Classes
Image4d
Realign4d
Functions
neurospin.segmentation.vem
Module:
neurospin.segmentation.vem
Class
VemTissueClassification
Functions
neurospin.spatial_models.bayesian_structural_analysis
Module:
neurospin.spatial_models.bayesian_structural_analysis
Functions
neurospin.spatial_models.bsa_io
Module:
neurospin.spatial_models.bsa_io
neurospin.spatial_models.hierarchical_parcellation
Module:
neurospin.spatial_models.hierarchical_parcellation
Functions
neurospin.spatial_models.hroi
Module:
neurospin.spatial_models.hroi
Class
NROI
Functions
neurospin.spatial_models.parcel_io
Module:
neurospin.spatial_models.parcel_io
Functions
neurospin.spatial_models.parcellation
Module:
neurospin.spatial_models.parcellation
Parcellation
neurospin.spatial_models.roi
Module:
neurospin.spatial_models.roi
Classes
DiscreteROI
MultiROI
MultipleROI
ROI
neurospin.spatial_models.structural_bfls
Module:
neurospin.spatial_models.structural_bfls
Class
landmark_regions
Functions
neurospin.statistical_mapping
Module:
neurospin.statistical_mapping
Class
LinearModel
Functions
neurospin.utils.design_matrix
Module:
neurospin.utils.design_matrix
Classes
BlockParadigm
DesignMatrix
EventRelatedParadigm
Paradigm
Functions
neurospin.utils.emp_null
Module:
neurospin.utils.emp_null
Classes
ENN
FDR
Functions
neurospin.utils.ffx
Module:
neurospin.utils.ffx
Functions
neurospin.utils.mask
Module:
neurospin.utils.mask
Functions
neurospin.utils.optimize
Module:
neurospin.utils.optimize
neurospin.utils.random_threshold
Module:
neurospin.utils.random_threshold
Functions
neurospin.utils.reproducibility_measures
Module:
neurospin.utils.reproducibility_measures
Functions
neurospin.utils.simul_multisubject_fmri_dataset
Module:
neurospin.utils.simul_multisubject_fmri_dataset
Functions
neurospin.utils.smoothing
Module:
neurospin.utils.smoothing
neurospin.utils.two_binomial_mixture
Module:
neurospin.utils.two_binomial_mixture
TwoBinomialMixture
neurospin.utils.zscore
Module:
neurospin.utils.zscore
neurospin.viz_tools.activation_maps
Module:
neurospin.viz_tools.activation_maps
Functions
neurospin.viz_tools.anat_cache
Module:
neurospin.viz_tools.anat_cache
neurospin.viz_tools.cm
Module:
neurospin.viz_tools.cm
Functions
neurospin.viz_tools.coord_tools
Module:
neurospin.viz_tools.coord_tools
Functions
neurospin.viz_tools.maps_3d
Module:
neurospin.viz_tools.maps_3d
Functions
neurospin.viz_tools.ortho_slicer
Module:
neurospin.viz_tools.ortho_slicer
OrthoSlicer
testing.decorators
Module:
testing.decorators
Functions
testing.lightunit
Module:
testing.lightunit
Authors
testing.nitest
Module:
testing.nitest
testing.nosepatch
Module:
testing.nosepatch
utils.data
Module:
utils.data
Classes
Bomber
DataError
Datasource
VersionedDatasource
Functions
utils.environment
Module:
utils.environment
Functions
utils.onetime
Module:
utils.onetime
References
OneTimeProperty
utils.perlpie
Module:
utils.perlpie
Parameters
Requires
Examples
Functions
utils.tmpdirs
Module:
utils.tmpdirs
Classes
InTemporaryDirectory
TemporaryDirectory
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