io.imageformats.minc

Module: io.imageformats.minc

Inheritance diagram for nipy.io.imageformats.minc:

Classes

MincError

class nipy.io.imageformats.minc.MincError

Bases: exceptions.Exception

__init__()

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

args

message

MincHeader

class nipy.io.imageformats.minc.MincHeader(mincfile, endianness=None, check=True)

Bases: object

__init__(mincfile, endianness=None, check=True)

check_fix()

classmethod from_fileobj(klass, fileobj, endianness=None, check=True)

get_best_affine()

get_data_dtype()

get_data_shape()

get_scaled_data()

get_unscaled_data()

get_zooms()

items()

keys()

values()

MincImage

class nipy.io.imageformats.minc.MincImage(data, affine, header=None, extra=None)

Bases: nipy.io.imageformats.spatialimages.SpatialImage

__init__(data, affine, header=None, extra=None)

static filespec_to_files(filespec)

classmethod from_filename(klass, filename)

classmethod from_files(klass, files)

classmethod from_filespec(klass, img, filespec)

classmethod from_image(klass, img)

Create new instance of own class from img

This is a class method

Parameters:

img : spatialimage instance

In fact, an object with the API of spatialimage - specifically get_data, get_affine, get_header and extra.

Returns:

cimg : spatialimage instance

Image, of our own class

get_affine()

Get affine, correcting for spatial dims

get_data()

Lazy load of data

get_data_dtype()

get_header()

get_shape()

classmethod instance_to_filename(klass, img, filename)

Save img in our own format, to name implied by filename

This is a class method

Parameters:

img : spatialimage instance

In fact, an object with the API of spatialimage - specifically get_data, get_affine, get_header and extra.

filename : str

Filename, implying name to which to save image.

classmethod load(klass, filename)

classmethod save(klass, img, filename)

set_data_dtype(dtype)

to_filename(filename)

Write image to files implied by filename string

Returns:None :

to_files(files=None)

to_filespec(filename)

netcdf_fileobj

class nipy.io.imageformats.minc.netcdf_fileobj(fileobj)

Bases: scipy.io.netcdf.netcdf_file

__init__(fileobj)

close()

create_dimension(name, length)

create_variable(name, type, dimensions)

flush()

read(size=-1)

Alias for reading the file buffer.

sync()