| CartMolecularCoor(Ref< Molecule > &mol) (defined in CartMolecularCoor) | CartMolecularCoor | |
| CartMolecularCoor(StateIn &) (defined in CartMolecularCoor) | CartMolecularCoor | |
| CartMolecularCoor(const Ref< KeyVal > &) | CartMolecularCoor | |
| change_coordinates() | MolecularCoor | [virtual] |
| class_desc() const | DescribedClass | |
| class_name() const | DescribedClass | |
| class_version() const | DescribedClass | |
| debug_ (defined in MolecularCoor) | MolecularCoor | [protected] |
| dereference() | RefCount | [inline] |
| DescribedClass() (defined in DescribedClass) | DescribedClass | |
| DescribedClass(const DescribedClass &) (defined in DescribedClass) | DescribedClass | |
| dim() | CartMolecularCoor | [virtual] |
| dim_ (defined in CartMolecularCoor) | CartMolecularCoor | [protected] |
| dim_natom3() | MolecularCoor | [inline] |
| dir_restore_state(StateIn &si, const char *objectname, const char *keyword=0) (defined in SavableState) | SavableState | [static] |
| dnatom3_ (defined in MolecularCoor) | MolecularCoor | [protected] |
| guess_hessian(RefSymmSCMatrix &hessian) | CartMolecularCoor | [virtual] |
| identifier() | Identity | [inline] |
| init() | CartMolecularCoor | [protected, virtual] |
| inverse_hessian(RefSymmSCMatrix &) | CartMolecularCoor | [virtual] |
| key_restore_state(StateIn &si, const char *keyword) | SavableState | [static] |
| lock_ptr() const | RefCount | |
| managed() const (defined in RefCount) | RefCount | [inline] |
| managed() const | RefCount | [inline] |
| matrixkit() const (defined in MolecularCoor) | MolecularCoor | [inline] |
| matrixkit_ (defined in MolecularCoor) | MolecularCoor | [protected] |
| MolecularCoor(Ref< Molecule > &) (defined in MolecularCoor) | MolecularCoor | |
| MolecularCoor(StateIn &) (defined in MolecularCoor) | MolecularCoor | |
| MolecularCoor(const Ref< KeyVal > &) | MolecularCoor | |
| molecule() const | MolecularCoor | [inline] |
| molecule_ (defined in MolecularCoor) | MolecularCoor | [protected] |
| nconstrained() | MolecularCoor | [virtual] |
| nreference() const | RefCount | [inline] |
| operator=(const SavableState &) (defined in SavableState) | SavableState | |
| operator=(const DescribedClass &) (defined in DescribedClass) | DescribedClass | |
| operator=(const RefCount &) (defined in RefCount) | RefCount | [inline, protected] |
| print(std::ostream &=ExEnv::out()) const | CartMolecularCoor | [virtual] |
| print_simples(std::ostream &=ExEnv::out()) const (defined in CartMolecularCoor) | CartMolecularCoor | [virtual] |
| RefCount() (defined in RefCount) | RefCount | [inline, protected] |
| RefCount(const RefCount &) (defined in RefCount) | RefCount | [inline, protected] |
| reference() | RefCount | [inline] |
| restore_state(StateIn &si) | SavableState | [static] |
| SavableState() (defined in SavableState) | SavableState | [protected] |
| SavableState(const SavableState &) (defined in SavableState) | SavableState | [protected] |
| SavableState(StateIn &) | SavableState | [protected] |
| save_data_state(StateOut &) | CartMolecularCoor | [virtual] |
| save_object_state(StateOut &) | SavableState | |
| save_state(StateOut &) | SavableState | |
| save_state(SavableState *s, StateOut &) (defined in SavableState) | SavableState | [static] |
| save_vbase_state(StateOut &) | SavableState | [virtual] |
| to_cartesian(const Ref< Molecule > &, const RefSCVector &internal) (defined in CartMolecularCoor) | CartMolecularCoor | [virtual] |
| to_cartesian(RefSCVector &cartesian, RefSCVector &internal) | CartMolecularCoor | [virtual] |
| to_cartesian(RefSymmSCMatrix &cart, RefSymmSCMatrix &internal) | CartMolecularCoor | [virtual] |
| MolecularCoor::to_cartesian(const RefSCVector &internal) | MolecularCoor | |
| to_internal(RefSCVector &internal) | CartMolecularCoor | [virtual] |
| to_internal(RefSCVector &internal, RefSCVector &cartesian) | CartMolecularCoor | [virtual] |
| to_internal(RefSymmSCMatrix &internal, RefSymmSCMatrix &cart) | CartMolecularCoor | [virtual] |
| unlock_ptr() const | RefCount | |
| unmanage() | RefCount | [inline] |
| use_locks(bool inVal) | RefCount | |
| ~CartMolecularCoor() (defined in CartMolecularCoor) | CartMolecularCoor | [virtual] |
| ~DescribedClass() (defined in DescribedClass) | DescribedClass | [virtual] |
| ~Identity() (defined in Identity) | Identity | [virtual] |
| ~MolecularCoor() (defined in MolecularCoor) | MolecularCoor | [virtual] |
| ~RefCount() (defined in RefCount) | RefCount | [virtual] |
| ~SavableState() (defined in SavableState) | SavableState | [virtual] |