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libSBML C++ API
libSBML 5.10.0 C++ API
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libSBML C++ API
libSBML 5.10.0 C++ API
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| CAlgebraicRule | {core} Implementation of SBML's AlgebraicRule construct |
| CAssignmentRule | {core} Implementation of SBML's AssignmentRule construct |
| CAssociation | {fbc} Implementation of the 'fbc' proposed package Association construct |
| CASTNode | {core} Abstract Syntax Tree (AST) representation of a mathematical expression |
| CBoundingBox | {layout} Representation of a bounding box |
| CCobraToFbcConverter | {fbc} Implementation of a COBRA to SBML Level 3 'fbc' package converter |
| CCompartment | {core} Implementation of SBML's Compartment construct |
| CCompartmentGlyph | {layout} Representation of a compartment glyph |
| CCompartmentType | {core} Implementation of SBML's Level 2's CompartmentType construct |
| CCompBase | {comp} A convenience subclass of “comp” package SBase-derived classes |
| CCompExtension | {comp} The core module of the “comp” package extension |
| CCompFlatteningConverter | {comp} Flattening converter for the “comp” package |
| CCompModelPlugin | {comp} Implementation of the “comp” package extention to the Model construct |
| CCompPkgNamespaces | {comp} Extension of SBMLNamespaces for the SBML Level 3 'comp' package |
| CCompSBasePlugin | {comp} Implementation of the “comp” package extention to the SBase construct |
| CCompSBMLDocumentPlugin | {comp} Implementation of the “comp” package extention to the SBMLDocument construct |
| CCompValidator | {comp} Entry point for libSBML's implementation of SBML validation rules for the “comp” package |
| CConstraint | {core} Implementation of SBML's Constraint construct |
| CConversionOption | {core} Class of object that encapsulates a conversion option |
| CConversionProperties | {core} Class of object that encapsulates the properties of an SBML converter |
| CCubicBezier | {layout} A CubicBezier represents a smooth curve in the “layout” package |
| CCurve | {layout} The Curve class describes how to connect elements in a diagram defined with the use of the “layout” package |
| CCVTerm | {core} Representation of MIRIAM-compliant controlled vocabulary annotation |
| CDate | {core} Representation of MIRIAM-compliant dates used in ModelHistory |
| CDefaultTerm | {qual} The DefaultTerm class for the Qualitative Models package |
| CDelay | {core} Implementation of SBML's Delay construct for Event |
| CDeletion | {comp} Implementation of the Deletion construct from the “comp” package |
| CDimensions | {layout} The Dimensions class describes the overall 2D or 3D shape of a “layout” package object |
| Cdoc_about_mathml_semantic_annotations | The <semantics> element is a MathML 2.0 construct that can be used to associate additional information with a MathML construct |
| Cdoc_additional_typecode_details | |
| Cdoc_algebraicrule_setting_lv | |
| Cdoc_astnode_types | |
| Cdoc_base_units | |
| Cdoc_compartment_both_size_and_volume | |
| Cdoc_compartment_units | |
| Cdoc_compartmenttype_setting_lv | |
| Cdoc_config_for_reading_zipped_files | |
| Cdoc_config_for_writing_zipped_files | |
| Cdoc_constraint_setting_lv | |
| Cdoc_cvterm_common_description | |
| Cdoc_date_string_format | |
| Cdoc_delay_setting_lv | |
| Cdoc_delay_units | |
| Cdoc_errorlog_what_are_severities | |
| Cdoc_event_setting_lv | |
| Cdoc_event_using_useValuesFromTriggerTime | |
| Cdoc_eventassignment_units | |
| Cdoc_id_syntax | |
| Cdoc_initialassignment_units | |
| Cdoc_kineticlaw_units | |
| Cdoc_localparameter_units | |
| Cdoc_note_assignmentRule_setting_lv | |
| Cdoc_note_charge_deprecated | |
| Cdoc_note_compartment_setting_lv | |
| Cdoc_note_compartment_volume | |
| Cdoc_note_eventassignment_setting_lv | |
| Cdoc_note_functiondefinition_setting_lv | |
| Cdoc_note_initialassignment_setting_lv | |
| Cdoc_note_kineticlaw_setting_lv | |
| Cdoc_note_localparameter_setting_lv | |
| Cdoc_note_mathml_semantic_annotations_uncommon | |
| Cdoc_note_model_setting_lv | |
| Cdoc_note_modifierspeciesreference_setting_lv | |
| Cdoc_note_object_is_copied | |
| Cdoc_note_parameter_about_constant | |
| Cdoc_note_parameter_setting_lv | |
| Cdoc_note_priority_only_l3 | |
| Cdoc_note_priority_setting_lv | |
| Cdoc_note_raterule_setting_lv | |
| Cdoc_note_reaction_setting_lv | |
| Cdoc_note_sbmlreader_error_handling | |
| Cdoc_note_spatial_dimensions_as_double | |
| Cdoc_note_species_setting_lv | |
| Cdoc_note_species_units | |
| Cdoc_note_speciesreference_setting_lv | |
| Cdoc_note_speciestype_setting_lv | |
| Cdoc_note_stoichiometrymath_availability | |
| Cdoc_note_stoichiometrymath_setting_lv | |
| Cdoc_note_timeunits_substanceunits | |
| Cdoc_note_unassigned_unit_are_not_a_default | |
| Cdoc_note_unit_analysis_depends_on_model | |
| Cdoc_note_unit_inference_depends_on_model | |
| Cdoc_note_unit_setting_lv | |
| Cdoc_note_unitdefinition_setting_lv | |
| Cdoc_rule_level_1 | |
| Cdoc_rule_units | |
| Cdoc_rules_general_summary | |
| Cdoc_sbase_what_is_user_data | |
| Cdoc_sbml_error_code_ranges | |
| Cdoc_sbml_error_table | |
| Cdoc_sbmldocument_default_level | |
| Cdoc_sbmldocument_default_version | |
| Cdoc_sbmlnamespaces_what_is_it | |
| Cdoc_sbmlreader_if_compressed | |
| Cdoc_summary_of_string_math | |
| Cdoc_summary_of_string_math_l3 | |
| Cdoc_warning_delay_math_literals | |
| Cdoc_warning_event_timeUnits | |
| Cdoc_warning_eventassignment_math_literals | |
| Cdoc_warning_initialassignment_math_literals | |
| Cdoc_warning_kineticlaw_math_literals | |
| Cdoc_warning_L1_math_string_syntax | |
| Cdoc_warning_modifying_structure | |
| Cdoc_warning_reaction_cant_ignore_fast | |
| Cdoc_warning_rule_math_literals | |
| Cdoc_warning_species_spatialSizeUnits | |
| Cdoc_warning_typecodes_not_unique | |
| Cdoc_warning_unit_offset_only_l2v1 | |
| Cdoc_warning_useValuesFromTriggerTime | |
| Cdoc_what_are_annotations | |
| Cdoc_what_are_cvterms | |
| Cdoc_what_are_notes | |
| Cdoc_what_are_plugins | |
| Cdoc_what_are_sbmlnamespaces | |
| Cdoc_what_are_typecodes | |
| Cdoc_what_is_astnode | |
| Cdoc_what_is_listof | |
| Cdoc_what_is_metaid | |
| Cdoc_what_is_metaidref | |
| Cdoc_what_is_SBMLDocument | |
| Cdoc_what_is_sid | |
| Cdoc_what_is_sidref | |
| Cdoc_what_is_unitsidref | |
| CEvent | {core} Implementation of SBML's Event construct |
| CEventAssignment | {core} Implementation of SBML's EventAssignment construct for Event |
| CExternalModelDefinition | {comp} Implementation of the ExternalModelDefinition construct from the “comp” package |
| CFbcExtension | {fbc} The core module of the 'fbc' package extension |
| CFbcModelPlugin | {fbc} Implementation of the 'fbc' package extention to the Model construct |
| CFbcPkgNamespaces | {fbc} Extension of SBMLNamespaces for the SBML Level 3 'fbc' package |
| CFbcSBMLDocumentPlugin | {fbc} Implementation of the 'fbc' package extention to the SBMLDocument construct |
| CFbcSpeciesPlugin | {fbc} Implementation of the 'fbc' package extention to the Species construct |
| CFbcToCobraConverter | {fbc} Implementation of a SBML Level 3 'fbc' package to COBRA converter |
| CFbcValidator | {fbc} Entry point for libSBML's implementation of SBML validation rules for 'fbc' |
| CFluxBound | {fbc} Implementation of the 'fbc' package FluxBound construct |
| CFluxObjective | {fbc} Implementation of the 'fbc' package FluxObjective construct |
| CFormulaTokenizer_t | {core} used to track the state of tokenizing a string |
| CFunctionDefinition | {core} Implementation of SBML's FunctionDefinition construct |
| CFunctionTerm | {qual} The FunctionTerm class for the Qualitative Models package |
| CGeneAssociation | {fbc} Implementation of the 'fbc' package GeneAssociation construct |
| CGeneralGlyph | {layout} The GeneralGlyph is used by the “layout” package to represent any SBML object |
| CGraphicalObject | {layout} The basic “layout” package element for storing layout information |
| CInitialAssignment | {core} Implementation of SBML's InitialAssignment construct |
| CInput | {qual} The Input class for the Qualitative Models package |
| CKineticLaw | {core} Implementation of SBML's KineticLaw construct |
| CL3ParserSettings | {core} A helper class for controlling the behavior of the text-string formula parser |
| CLayout | {layout} Each Layout object stores a set of layout information for objects in the Model |
| CLayoutExtension | {layout} The core module of the 'layout' package extension |
| CLayoutModelPlugin | {layout} Implementation of the 'layout' package extention to the Model construct |
| CLayoutPkgNamespaces | {layout} Extension of SBMLNamespaces for the SBML Level 3 'layout' package |
| CLayoutSBMLDocumentPlugin | {layout} Implementation of the 'layout' package extention to the SBMLDocument construct |
| CLayoutSpeciesReferencePlugin | {layout} Implementation of the 'layout' package extention to the SpeciesReference construct |
| CLayoutValidator | {layout} Entry point for libSBML's implementation of SBML validation rules for the “layout” package |
| CLineSegment | {layout} The representation of a line in the “layout” package |
| CList | {core} Simple, plain, generic lists, and associated list utilities |
| CListOf | {core} Parent class for libSBML's "ListOfXYZ" classes |
| CListOfCompartmentGlyphs | {layout} Implementation of the ListOfCompartmentGlyphs construct from the “layout” package |
| CListOfCompartments | {core} Implementation of SBML Level 2's ListOfCompartments construct |
| CListOfCompartmentTypes | {core} Implementation of SBML's ListOfCompartmentTypes construct |
| CListOfConstraints | {core} Implementation of SBML's ListOfConstraints construct |
| CListOfDeletions | {comp} Implementation of the ListOfDeletions construct from the “comp” package |
| CListOfEventAssignments | {core} Implementation of SBML's ListOfEventAssignments construct |
| CListOfEvents | {core} Implementation of SBML's ListOfEvents construct |
| CListOfExternalModelDefinitions | {comp} Implementation of the ListOfExternalModelDefinitions construct from the “comp” package |
| CListOfFluxBounds | {fbc} Implementation of the ListOfFluxBounds construct from the 'fbc' package |
| CListOfFluxObjectives | {fbc} Implementation of the 'fbc' package ListOfFluxObjectives construct |
| CListOfFunctionDefinitions | {core} Implementation of SBML's ListOfFunctionDefinitions construct |
| CListOfFunctionTerms | {qual} Implementation of the ListOfFunctionTerms construct from the 'qual' package |
| CListOfGeneAssociations | {fbc} Implementation of the 'fbc' package suggested ListOfGeneAssociations annotation construct |
| CListOfGraphicalObjects | {layout} Implementation of the ListOfAdditionalGraphicalObjects construct from the “layout” package |
| CListOfInitialAssignments | {core} Implementation of SBML's ListOfInitialAssignments construct |
| CListOfInputs | {qual} Implementation of the ListOfInputs construct from the 'qual' package |
| CListOfLayouts | {layout} Implementation of the * ListOfLayouts construct from the “layout” package |
| CListOfLineSegments | {layout} Implementation of the ListOfLineSegments construct from the 'layout' package |
| CListOfLocalParameters | {core} Implementation of SBML Level 3's ListOfLocalParameters construct |
| CListOfModelDefinitions | {comp} Implementation of the ListOfModelDefinitions construct from the “comp” package |
| CListOfObjectives | {fbc} Implementation of the ListOfObjectives construct from the 'fbc' package |
| CListOfOutputs | {qual} Implementation of the ListOfOutputs construct from the 'qual' package |
| CListOfParameters | {core} Implementation of SBML's ListOfParameters construct |
| CListOfPorts | {comp} Implementation of the ListOfPorts construct from the “comp” package |
| CListOfQualitativeSpecies | {qual} Implementation of the ListOfQualitativeSpecies construct from the 'qual' package |
| CListOfReactionGlyphs | {layout} Implementation of the ListOfReactionGlyphs construct from the “layout” package |
| CListOfReactions | {core} Implementation of SBML's ListOfReactions construct |
| CListOfReferenceGlyphs | {layout} Implementation of the ListOfReferenceGlyphs construct from the “layout” package |
| CListOfReplacedElements | {comp} Implementation of the ListOfReplacedElements construct from the “comp” package |
| CListOfRules | {core} Implementation of SBML's ListOfRules construct |
| CListOfSpecies | {core} Implementation of SBML Level 2's ListOfSpecies construct |
| CListOfSpeciesGlyphs | {layout} Implementation of the ListOfSpeciesGlyphs construct from the “layout” package |
| CListOfSpeciesReferenceGlyphs | {layout} Implementation of the ListOfSpeciesReferenceGlyphs construct from the “layout” package |
| CListOfSpeciesReferences | {core} Implementation of SBML's ListOfSpeciesReferences construct |
| CListOfSpeciesTypes | {core} Implementation of SBML's ListOfSpeciesTypes construct |
| CListOfSubmodels | {comp} Implementation of the ListOfSubmodels construct from the “comp” package |
| CListOfTextGlyphs | {layout} Implementation of the ListOfTextGlyphs construct from the “layout” package |
| CListOfTransitions | {qual} Implementation of the ListOfTransitions construct from the 'qual' package |
| CListOfUnitDefinitions | {core} Implementation of SBML's ListOfUnitDefinitions construct |
| CListOfUnits | {core} Implementation of SBML's ListOfUnits construct |
| CLocalParameter | {core} Implementation of SBML Level 3's LocalParameter construct |
| CModel | {core} Implementation of SBML's Model construct |
| CModelCreator | {core} Representation of MIRIAM-compliant model creator data used in ModelHistory |
| CModelDefinition | {comp} Implementation of the ModelDefinition construct from the “comp” package |
| CModelHistory | {core} Representation of MIRIAM-compliant model history data |
| CModifierSpeciesReference | {core} Implementation of SBML's ModifierSpeciesReference construct |
| CObjective | {fbc} Implementation of the 'fbc' package Objective construct |
| COutput | {qual} The Output class for the Qualitative Models package |
| CParameter | {core} Implementation of SBML's Parameter construct |
| CPoint | {layout} The representation of a point in the “layout” package |
| CPort | {comp} Implementation of the Port construct from the “comp” package |
| CPriority | {core} Implementation of SBML Level 3's Priority construct for Event |
| CQualExtension | {qual} The core module of the 'qual' package extension |
| CQualitativeSpecies | {qual} The QualitativeSpecies class for the Qualitative Models package |
| CQualModelPlugin | {qual} Implementation of the 'qual' package extention to the Model construct |
| CQualPkgNamespaces | {qual} Extension of SBMLNamespaces for the SBML Level 3 'qual' package |
| CQualSBMLDocumentPlugin | {qual} Implementation of the 'qual' package extention to the SBMLDocument construct |
| CQualValidator | {qual} Entry point for libSBML's implementation of SBML validation rules for 'qual' |
| CRateRule | {core} Implementation of SBML's RateRule construct |
| CRDFAnnotationParser | {core} Read/write/manipulate RDF annotations stored in SBML annotation elements |
| CReaction | {core} Implementation of SBML's Reaction construct |
| CReactionGlyph | {layout} The ReactionGlyph is used to represent Reaction elements in the layout |
| CReferenceGlyph | {layout} The ReferenceGlyph is used by the “layout” package to connect a GraphicalObject and a GeneralGlyph |
| CReplacedBy | {comp} Implementation of the ReplacedBy construct from the “comp” package |
| CReplacedElement | {comp} Implementation of the ReplacedElement construct from the “comp” package |
| CReplacing | {comp} A convenience subclass of the ReplacedElement and ReplacedBy constructs from the “comp” package |
| CRule | {core} Implementation of SBML's Rule construct |
| CSBase | {core} Implementation of SBase, the base class of most SBML objects |
| CSBaseExtensionPoint | {core} Representation of an extension point of SBML's package extension |
| CSBasePlugin | {core} Representation of a plug-in object of SBML's package extension |
| CSBasePluginCreator | {core} Template class of SBasePlugin |
| CSBasePluginCreatorBase | {core} Base class of SBasePluginCreator |
| CSBaseRef | {comp} Implementation of the SBaseRef construct from the “comp” package |
| CSBMLConstructorException | {core} Class of exceptions thrown by constructors of some libSBML objects |
| CSBMLConverter | {core} Base class for SBML converters |
| CSBMLConverterRegister | {core} Template class for SBML converters to register with the registry |
| CSBMLConverterRegistry | {core} Registry of all SBML converters |
| CSBMLDocument | {core} Container for an SBML document and interface for global operations on SBML documents |
| CSBMLDocumentPlugin | {core} Template class for the SBMLDocument Plugin class needed by all packages |
| CSBMLDocumentPluginNotRequired | {core} Template class for the SBMLDocument Plugin class for non-required packages |
| CSBMLError | {core} Representation of errors, warnings and other diagnostics |
| CSBMLErrorLog | {core} Log of errors and other events encountered during SBML processing |
| CSBMLExtension | {core} The core component of SBML's package extension |
| CSBMLExtensionException | An exception class for SBMLExtensionException |
| CSBMLExtensionNamespaces | {core} Class to store the Level, Version and XML namespace information of an SBML extension package |
| CSBMLExtensionRegister | {core} Template class for registering an extension package to the SBMLExtensionRegistry class |
| CSBMLExtensionRegistry | {core} Registry class in which extension packages are registered |
| CSBMLFileResolver | {comp} A resolver for documents stored on a file system |
| CSBMLFunctionDefinitionConverter | {core} SBML converter for replacing function definitions |
| CSBMLIdConverter | {core} SBML converter for replacing SIds |
| CSBMLInferUnitsConverter | {core} SBML converter for inferring the units of parameters |
| CSBMLInitialAssignmentConverter | {core} SBML converter for replacing initial assignments |
| CSBMLInternalValidator | {core} Implementation of basic SBML consistency checks and other validations |
| CSBMLLevelVersionConverter | {core} SBML converter for transforming documents from one Level+Version to another |
| CSBMLLocalParameterConverter | {core} SBML converter for replacing SIds |
| CSBMLNamespaces | {core} Class to store SBML Level, Version and namespace information |
| CSBMLReactionConverter | {core} SBML converter for replacing reactions with rate rules |
| CSBMLReader | {core} Methods for reading SBML from files and text strings |
| CSBMLResolver | {comp} Base class for SBML resolvers |
| CSBMLResolverRegistry | {comp} Registry of all SBML resolvers |
| CSBMLRuleConverter | {core} SBML converter for reordering rules and assignments in a model |
| CSBMLStripPackageConverter | {core} SBML converter for removing packages |
| CSBMLUnitsConverter | {core} SBML converter to convert a model's units to SI units |
| CSBMLUri | {comp} utility class for handling URIs |
| CSBMLValidator | {core} Base class for SBML validators |
| CSBMLVisitor | {core} Support class for performing operations on SBML objects |
| CSBMLWriter | {core} Methods for writing SBML to files and text strings |
| CSBO | {core} Methods for interacting with Systems Biology Ontology terms |
| CSimpleSpeciesReference | {core} Implementation of SBML's SimpleSpeciesReference construct |
| CSpecies | {core} Implementation of SBML's Species construct |
| CSpeciesGlyph | {layout} The SpeciesGlyph represents a Species in the “layout” package |
| CSpeciesReference | {core} Implementation of SBML's SpeciesReference construct |
| CSpeciesReferenceGlyph | {layout} A SpeciesReferenceGlyph represents a reactant or product from a Reaction in the “layout” package |
| CSpeciesType | {core} Implementation of SBML Level 2's SpeciesType construct |
| CStoichiometryMath | {core} Implementation of SBML Level 2's StoichiometryMath construct |
| CSubmodel | {comp} Implementation of the Submodel construct from the “comp” package |
| CSyntaxChecker | {core} Methods for checking syntax of SBML identifiers and other strings |
| CTextGlyph | {layout} The TextGlyph class describes the position and dimension of text labels in the “layout” package |
| CToken_t | {core} Structure used to store a token returned by FormulaTokenizer_nextToken() |
| CTransition | {qual} The Transition class for the Qualitative Models package |
| CTrigger | {core} Implementation of SBML's Trigger construct for Event |
| CUnit | {core} Implementation of SBML's Unit construct |
| CUnitDefinition | {core} Implementation of SBML's UnitDefinition construct |
| CValidator | {core} Entry point for libSBML's implementation of SBML validation rules |
| CVConstraint | {core} Helper class for implementing SBML validation and consistency-checking |
| CXMLAttributes | {core} Representation of attributes on an XML node |
| CXMLConstructorException | {core} Class of exceptions thrown by constructors of some libSBML objects |
| CXMLError | {core} Representation of errors, warnings and other diagnostics |
| CXMLErrorLog | {core} Log of errors and other events encountered while processing an XML file or data stream |
| CXMLLogOverride | {core} Utility class implementing a temporary override the severity on error logs |
| CXMLNamespaces | {core} Representation of XML Namespaces |
| CXMLNode | {core} Representation of a node in an XML document tree |
| CXMLToken | {core} Representation of a token in an XML stream |
| CXMLTriple | {core} Representation of a qualified XML name |
