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FbcSBMLError.h File Reference

Represents SBML errors and other diagnostics. More...

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enum  FbcSBMLErrorCode_t {
  FbcUnknown = 2010100,
  FbcNSUndeclared = 2010101,
  FbcElementNotInNs = 2010102,
  FbcDuplicateComponentId = 2010301,
  FbcSBMLSIdSyntax = 2010302,
  FbcAttributeRequiredMissing = 2020101,
  FbcAttributeRequiredMustBeBoolean = 2020102,
  FbcRequiredFalse = 2020103,
  FbcOnlyOneEachListOf = 2020201,
  FbcNoEmptyListOfs = 2020202,
  FbcLOFluxBoundsAllowedElements = 2020203,
  FbcLOObjectivesAllowedElements = 2020204,
  FbcLOFluxBoundsAllowedAttributes = 2020205,
  FbcLOObjectivesAllowedAttributes = 2020206,
  FbcActiveObjectiveSyntax = 2020207,
  FbcActiveObjectiveRefersObjective = 2020208,
  FbcSpeciesAllowedL3Attributes = 2020301,
  FbcSpeciesChargeMustBeInteger = 2020302,
  FbcSpeciesFormulaMustBeString = 2020303,
  FbcFluxBoundAllowedL3Attributes = 2020401,
  FbcFluxBoundAllowedElements = 2020402,
  FbcFluxBoundRequiredAttributes = 2020403,
  FbcFluxBoundRectionMustBeSIdRef = 2020404,
  FbcFluxBoundNameMustBeString = 2020405,
  FbcFluxBoundOperationMustBeEnum = 2020406,
  FbcFluxBoundValueMustBeDouble = 2020407,
  FbcFluxBoundReactionMustExist = 2020408,
  FbcFluxBoundsForReactionConflict = 2020409,
  FbcObjectiveAllowedL3Attributes = 2020501,
  FbcObjectiveAllowedElements = 2020502,
  FbcObjectiveRequiredAttributes = 2020503,
  FbcObjectiveNameMustBeString = 2020504,
  FbcObjectiveTypeMustBeEnum = 2020505,
  FbcObjectiveOneListOfObjectives = 2020506,
  FbcObjectiveLOFluxObjMustNotBeEmpty = 2020507,
  FbcObjectiveLOFluxObjOnlyFluxObj = 2020508,
  FbcObjectiveLOFluxObjAllowedAttribs = 2020509,
  FbcFluxObjectAllowedL3Attributes = 2020601,
  FbcFluxObjectAllowedElements = 2020602,
  FbcFluxObjectRequiredAttributes = 2020603,
  FbcFluxObjectNameMustBeString = 2020604,
  FbcFluxObjectReactionMustBeSIdRef = 2020605,
  FbcFluxObjectReactionMustExist = 2020606,
  FbcFluxObjectCoefficientMustBeDouble = 2020607
}
 Codes for all SBML-level errors and warnings from the 'fbc' package. More...
 

Detailed Description

Represents SBML errors and other diagnostics.

Author
Michael Hucka
Sarah Keating

Enumeration Type Documentation

enum FbcSBMLErrorCode_t

Codes for all SBML-level errors and warnings from the 'fbc' package.

These are distinguished from other SBML error codes by having a number between 2000000 and 2099999.

Calling programs may wish to check which enumeration a given SBMLError object's error identifier is actually from:
  • 0010000 to 0099999: SBMLErrorCode_t (a problem with the SBML core specification)
  • 1000000 to 1099999: CompSBMLErrorCode_t (a problem with the SBML Level 3 Hierarchical Model Composition package specification).
  • 2000000 to 2099999: FbcSBMLErrorCode_t (a problem with the SBML Level 3 Flux Balance Constraints package specification).
  • 3000000 to 3099999: QualSBMLErrorCode_t (a problem with the SBML Level 3 Qualitative Models package specification).
  • 6000000 to 6099999: LayoutSBMLErrorCode_t (a problem with the SBML Level 3 Layout package specification).
Other error code ranges are reserved for other packages.
Enumerator
FbcUnknown 

Unknown error from fbc

FbcNSUndeclared 

The fbc ns is not correctly declared

FbcElementNotInNs 

Element not in fbc namespace

FbcDuplicateComponentId 

Duplicate 'id' attribute value

FbcSBMLSIdSyntax 

Invalid 'id' attribute

FbcAttributeRequiredMissing 

Required fbc:required attribute on <sbml>

FbcAttributeRequiredMustBeBoolean 

The fbc:required attribute must be Boolean

FbcRequiredFalse 

The fbc:required attribute must be 'false'

FbcOnlyOneEachListOf 

One of each list of allowed

FbcNoEmptyListOfs 

ListOf elements cannot be empty

FbcLOFluxBoundsAllowedElements 

Allowed elements on ListOfFluxBounds

FbcLOObjectivesAllowedElements 

Allowed elements on ListOfObjectives

FbcLOFluxBoundsAllowedAttributes 

Allowed attributes on ListOfFluxBounds

FbcLOObjectivesAllowedAttributes 

Allowed attributes on ListOfObjectives

FbcActiveObjectiveSyntax 

Type of activeObjective attribute

FbcActiveObjectiveRefersObjective 

ActiveObjective must reference Objective

FbcSpeciesAllowedL3Attributes 

Species allowed attributes

FbcSpeciesChargeMustBeInteger 

Charge must be integer

FbcSpeciesFormulaMustBeString 

Chemical formula must be string

FbcFluxBoundAllowedL3Attributes 

<fluxBound> may only have 'metaId' and 'sboTerm' from L3 namespace

FbcFluxBoundAllowedElements 

<fluxBound> may only have <notes> and <annotations> from L3 Core

FbcFluxBoundRequiredAttributes 

Invalid attribute found on <fluxBound> object

FbcFluxBoundRectionMustBeSIdRef 

Datatype for 'fbc:reaction' must be SIdRef

FbcFluxBoundNameMustBeString 

The attribute 'fbc:name' must be of the data type string

FbcFluxBoundOperationMustBeEnum 

The attribute 'fbc:operation' must be of data type FbcOperation

FbcFluxBoundValueMustBeDouble 

The attribute 'fbc:value' must be of the data type double

FbcFluxBoundReactionMustExist 

'fbc:reaction' must refer to valid reaction

FbcFluxBoundsForReactionConflict 

Conflicting set of FluxBounds for a reaction

FbcObjectiveAllowedL3Attributes 

<objective> may only have 'metaId' and 'sboTerm' from L3 namespace

FbcObjectiveAllowedElements 

<objective> may only have <notes> and <annotations> from L3 Core

FbcObjectiveRequiredAttributes 

Invalid attribute found on <objective> object

FbcObjectiveNameMustBeString 

The attribute 'fbc:name' must be of the data type string

FbcObjectiveTypeMustBeEnum 

The attribute 'fbc:type' must be of data type FbcType.

FbcObjectiveOneListOfObjectives 

An <objective> must have one <listOfFluxObjectives>.

FbcObjectiveLOFluxObjMustNotBeEmpty 

<listOfFluxObjectives> subobject must not be empty

FbcObjectiveLOFluxObjOnlyFluxObj 

Invalid element found in <listOfFluxObjectives>

FbcObjectiveLOFluxObjAllowedAttribs 

<listOfFluxObjectives> may only have 'metaId' and 'sboTerm' from L3 core

FbcFluxObjectAllowedL3Attributes 

<fluxObjective> may only have 'metaId' and 'sboTerm' from L3 namespace

FbcFluxObjectAllowedElements 

<fluxObjective> may only have <notes> and <annotations> from L3 Core

FbcFluxObjectRequiredAttributes 

Invalid attribute found on <fluxObjective> object

FbcFluxObjectNameMustBeString 

The attribute 'fbc:name' must be of the data type string

FbcFluxObjectReactionMustBeSIdRef 

Datatype for 'fbc:reaction' must be SIdRef

FbcFluxObjectReactionMustExist 

'fbc:reaction' must refer to valid reaction

FbcFluxObjectCoefficientMustBeDouble 

The attribute 'fbc:coefficient' must be of the data type double