pappso::TimsXicExtractorInterface Class Reference

#include <timsxicextractorinterface.h>

Inheritance diagram for pappso::TimsXicExtractorInterface:

Public Member Functions
	TimsXicExtractorInterface (const TimsData *mp_tims_data)
virtual	~TimsXicExtractorInterface ()
void	setXicExtractMethod (XicExtractMethod method)
	set the XIC extraction method More...

Protected Member Functions
virtual void	extractTimsXicList (std::vector< TimsXicStructure > &timsXicList, double rtRange) const =0
	extract XICs for given coordinates XICs are extracted given their coordinates : retention time target, mobility range, mz range More...

Protected Attributes
const TimsData *	mp_timsData
XicExtractMethod	m_xicExtractMethod = XicExtractMethod::max

Private Attributes
friend	TimsData

Detailed Description

Todo:

set of minimum functions to build XICs using Tims data

Definition at line 41 of file timsxicextractorinterface.h.

Constructor & Destructor Documentation

TimsXicExtractorInterface()

TimsXicExtractorInterface::TimsXicExtractorInterface

(

const TimsData *

mp_tims_data

)

Definition at line 32 of file timsxicextractorinterface.cpp.

  : mp_timsData(mp_tims_data)
{
}

~TimsXicExtractorInterface()

TimsXicExtractorInterface::~TimsXicExtractorInterface ( )

virtual

Definition at line 38 of file timsxicextractorinterface.cpp.

{
}

Member Function Documentation

extractTimsXicList()

virtual void pappso::TimsXicExtractorInterface::extractTimsXicList ( std::vector< TimsXicStructure > &  timsXicList, double  rtRange  ) const

protectedpure virtual

extract XICs for given coordinates XICs are extracted given their coordinates : retention time target, mobility range, mz range

Parameters

timsXicList	list of TIMS XIC structures (XIC coordinates)
rtRange	the range in seconds that will be applied before and after XIC rtTarget to extract signal

Implemented in pappso::TimsDirectXicExtractor.

Referenced by pappso::TimsData::extractXicListByPrecursorIds().

setXicExtractMethod()

void TimsXicExtractorInterface::setXicExtractMethod

(

XicExtractMethod

method

)

set the XIC extraction method

Definition at line 43 of file timsxicextractorinterface.cpp.

{
  m_xicExtractMethod = method;
}

References m_xicExtractMethod.

Referenced by pappso::TimsData::extractXicListByPrecursorIds().

Member Data Documentation

m_xicExtractMethod

XicExtractMethod pappso::TimsXicExtractorInterface::m_xicExtractMethod = XicExtractMethod::max

protected

Definition at line 67 of file timsxicextractorinterface.h.

Referenced by pappso::TimsDirectXicExtractor::extractTimsXicList(), and setXicExtractMethod().

mp_timsData

const TimsData* pappso::TimsXicExtractorInterface::mp_timsData

protected

Definition at line 66 of file timsxicextractorinterface.h.

Referenced by pappso::TimsDirectXicExtractor::extractTimsXicList().

TimsData

friend pappso::TimsXicExtractorInterface::TimsData

private

Definition at line 43 of file timsxicextractorinterface.h.

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The documentation for this class was generated from the following files:

• pappsomspp/vendors/tims/xicextractor/timsxicextractorinterface.h
• pappsomspp/vendors/tims/xicextractor/timsxicextractorinterface.cpp