Uses of Interface
pal.treesearch.SearchMonitor
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Packages that use SearchMonitor Package Description pal.treesearch -
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Uses of SearchMonitor in pal.treesearch
Methods in pal.treesearch that return SearchMonitor Modifier and Type Method Description static SearchMonitorSearchMonitor.Utils. createNullMonitor()Methods in pal.treesearch with parameters of type SearchMonitor Modifier and Type Method Description doubleGeneralLikelihoodSearcher. optimiseAllFullHeirarchy(StoppingCriteria mainStopper, StoppingCriteria subStopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor)doubleGeneralLikelihoodSearcher. optimiseAllPlusSubstitutionModel(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, MultivariateMinimum substitutionModelMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, int substitutionModelOptimiseFrequency, MinimiserMonitor substitutionModelMonitor, MinimiserMonitor rateMonitor)doubleGeneralLikelihoodSearcher. optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor)doubleGeneralLikelihoodSearcher. optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor, int groupOptimistionType)doubleGeneralLikelihoodSearcher. optimiseAllSimpleHeirarchy(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor)doubleGeneralLikelihoodSearcher. optimiseGeneral(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback, SearchMonitor monitor)
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