Uses of Interface
pal.treesearch.FreeNode
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Packages that use FreeNode Package Description pal.treesearch -
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Uses of FreeNode in pal.treesearch
Classes in pal.treesearch that implement FreeNode Modifier and Type Class Description classFreeInternalNodeclassFreeLeafNodeclassPivotNodeMethods in pal.treesearch that return FreeNode Modifier and Type Method Description FreeNodeGeneralConstructionTool. createFreeNode(Node peer, FreeBranch parent, GeneralConstraintGroupManager.Store store)Create an appropriate free node given a peer, and it's parent branchFreeNodeFreeBranch. getLeft()FreeNodeFreeBranch. getOther(FreeNode caller)FreeNodeFreeBranch. getRight()Methods in pal.treesearch with parameters of type FreeNode Modifier and Type Method Description NodeFreeBranch. buildPALNodeBase(FreeNode caller)NodeFreeBranch. buildPALNodeES(FreeNode caller)voidFreeBranch. getAllComponents(java.util.ArrayList store, java.lang.Class componentType, FreeNode caller)ConditionalProbabilityStoreFreeBranch. getExtendedConditionalProbabilities(FreeNode caller, UnconstrainedLikelihoodModel.External externalCalculator, ConditionalProbabilityStore extendedStore, GeneralConstructionTool tool)ConditionalProbabilityStoreFreeBranch. getExtendedConditionalProbabilities(FreeNode caller, GeneralConstructionTool tool)FreeNodeFreeBranch. getOther(FreeNode caller)PatternInfoFreeBranch. getPatternInfo(GeneralConstructionTool tool, FreeNode caller)booleanFreeBranch. hasConnection(FreeBranch c, FreeNode caller)voidFreeBranch. setNodes(FreeNode left, FreeNode right)Does nothing to fix up tree structurevoidFreeInternalNode. swapConnection(FreeBranch original, FreeNode nodeToReplace, FreeBranch newConnection)voidFreeLeafNode. swapConnection(FreeBranch original, FreeNode nodeToReplace, FreeBranch newConnection)voidFreeNode. swapConnection(FreeBranch original, FreeNode nodeToReplace, FreeBranch newConnection)Should preserve tree integrityvoidPivotNode. swapConnection(FreeBranch original, FreeNode nodeToReplace, FreeBranch newConnection)Should preserve tree integrityvoidFreeBranch. swapNode(FreeNode nodeToReplace, FreeNode replacement)voidFreeBranch. testLikelihood(FreeNode caller, GeneralConstructionTool tool)java.lang.StringFreeBranch. toString(FreeNode caller)Constructors in pal.treesearch with parameters of type FreeNode Constructor Description FreeBranch(Node n, FreeNode parent, GeneralConstructionTool tool, GeneralConstraintGroupManager.Store store)Continuing recurison constructor for a given treeFreeBranch(FreeNode left, FreeNode right, double branchLength, GeneralConstructionTool tool)A generic constructor given two already defined left and right children
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