Uses of Interface
pal.treesearch.ConstraintModel
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Packages that use ConstraintModel Package Description pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.treesearch -
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Uses of ConstraintModel in pal.mep
Methods in pal.mep that return ConstraintModel Modifier and Type Method Description ConstraintModelDeltaModel. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)ConstraintModelMutationRateModel.Factory. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel) -
Uses of ConstraintModel in pal.treesearch
Classes in pal.treesearch that implement ConstraintModel Modifier and Type Class Description classFixedBSRDTGlobalClockModelclassFixedSRDTGlobalClockModelclassGlobalClockModelclassMRDTGlobalClockModelclassSRDTGlobalClockModelclassUnconstrainedModelMethods in pal.treesearch with parameters of type ConstraintModel Modifier and Type Method Description GeneralConstraintGroupManagerGeneralConstraintGroupManager.Store. getConstraintGroupManager(java.lang.String[] leafLabelSet, ConstraintModel constraints)Constructors in pal.treesearch with parameters of type ConstraintModel Constructor Description GeneralConstructionTool(ConstraintModel constraints, Alignment alignment)The constructorGeneralLikelihoodSearcher(Node baseTopology, Alignment baseAlignment, ConstraintModel constraintModel)
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