Uses of Interface pal.treesearch.ConstraintModel.GroupManager

Packages that use ConstraintModel.GroupManager
Package Description

pal.treesearch

Uses of ConstraintModel.GroupManager in pal.treesearch

Classes in pal.treesearch that implement ConstraintModel.GroupManager
Modifier and Type	Class	Description
`class`	`FixedBSRDTGlobalClockModel`
`class`	`FixedSRDTGlobalClockModel`
`class`	`GlobalClockModel`
`class`	`MRDTGlobalClockModel`
`class`	`SRDTGlobalClockModel`

Methods in pal.treesearch that return ConstraintModel.GroupManager
Modifier and Type	Method	Description
`ConstraintModel.GroupManager`	ConstraintModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`	Enquire about the clock constraint grouping of the leaf
`ConstraintModel.GroupManager`	FixedBSRDTGlobalClockModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`
`ConstraintModel.GroupManager`	FixedSRDTGlobalClockModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`
`ConstraintModel.GroupManager`	GlobalClockModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`
`ConstraintModel.GroupManager`	MRDTGlobalClockModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`
`ConstraintModel.GroupManager`	SRDTGlobalClockModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`
`ConstraintModel.GroupManager`	UnconstrainedModel.`getGlobalClockConstraintGrouping(java.lang.String[] leafLabelSet)`
`ConstraintModel.GroupManager`	GeneralConstraintGroupManager.`getRelatedGroup()`

Methods in pal.treesearch with parameters of type ConstraintModel.GroupManager
Modifier and Type	Method	Description
`Node`	AbstractParentableConstrainedNode.`buildDescendentPALNodeES(ConstraintModel.GroupManager groupManager)`
`Node`	ConstrainedLeafNode.`buildDescendentPALNodeES(ConstraintModel.GroupManager groupManager)`
`Node`	ConstrainedNode.`buildDescendentPALNodeES(ConstraintModel.GroupManager groupConstraints)`	Build node with Expected Substitution Units
`protected MolecularClockLikelihoodModel.Leaf`	AbstractLeafNode.`createNewConstrainedLeafCalculator(ConstraintModel.GroupManager parentGroup)`
`GeneralConstraintGroupManager`	GeneralConstraintGroupManager.Store.`getConstraintGroupManager(ConstraintModel.GroupManager grouping)`
`boolean`	GeneralConstraintGroupManager.`isSameGroup(ConstraintModel.GroupManager queryGroup)`
`void`	GroupLeader.`postSetupNotify(ConstraintModel.GroupManager groupConstraints)`	Tell the group leader that the groupConstraints have been set up (parameter wise), and that internal node heights for example may be calculated
`void`	PivotNode.`postSetupNotify(ConstraintModel.GroupManager groupConstraints)`
`void`	AbstractParentableConstrainedNode.`setupInternalNodeHeights(ConstraintModel.GroupManager groupConstraints)`
`void`	ConstrainedLeafNode.`setupInternalNodeHeights(ConstraintModel.GroupManager groupConstraints)`
`void`	ConstrainedNode.`setupInternalNodeHeights(ConstraintModel.GroupManager groupConstraints)`

Constructors in pal.treesearch with parameters of type ConstraintModel.GroupManager
Constructor	Description
`ConstrainedLeafNode(ParentableConstrainedNode parentNode, Node peer, double height, GeneralConstructionTool tool, ConstraintModel.GroupManager parentGroup)`
`GeneralConstraintGroupManager(ConstraintModel.GroupManager relatedGroup)`