Constructor Detail

• ConstrainedLeafNode

  public ConstrainedLeafNode​(ParentableConstrainedNode parentNode,
                             Node peer,
                             double height,
                             GeneralConstructionTool tool,
                             ConstraintModel.GroupManager parentGroup)

Method Detail

• recursivelySetParentPivot

  public void recursivelySetParentPivot​(PivotNode parentPivot)

  Specified by:

  recursivelySetParentPivot in interface ConstrainedNode

• setupInternalNodeHeights

  public void setupInternalNodeHeights​(ConstraintModel.GroupManager groupConstraints)

  Specified by:

  setupInternalNodeHeights in interface ConstrainedNode

• getMinOriginalDescendentLeafHeight

  public double getMinOriginalDescendentLeafHeight()

  Specified by:

  getMinOriginalDescendentLeafHeight in interface ConstrainedNode

• getMaxOriginalDescendentLeafHeight

  public double getMaxOriginalDescendentLeafHeight()

  Specified by:

  getMaxOriginalDescendentLeafHeight in interface ConstrainedNode

• getLeftChild

  public ConstrainedNode getLeftChild()

  Returns null as we can't have children...

  Specified by:

  getLeftChild in interface ConstrainedNode

  Returns:

  null

• getRightChild

  public ConstrainedNode getRightChild()

  Specified by:

  getRightChild in interface ConstrainedNode

• recursivelyAdjustNodeHeight

  public void recursivelyAdjustNodeHeight​(ConstrainedNode.HeightAdjustment heightDelta)

  Specified by:

  recursivelyAdjustNodeHeight in interface ConstrainedNode

• toStringHeights

  public java.lang.String toStringHeights()

  Specified by:

  toStringHeights in interface ConstrainedNode

• toStringLengths

  public java.lang.String toStringLengths​(double parentHeight)

  Specified by:

  toStringLengths in interface ConstrainedNode

• getMinimumDirectChildDistance

  public double getMinimumDirectChildDistance()

  Specified by:

  getMinimumDirectChildDistance in interface ConstrainedNode

  Returns:

  the minum distance to a child or zero if no children

• buildDescendentPALNodeBase

  public Node buildDescendentPALNodeBase()

  Description copied from interface: ConstrainedNode
  Build node model base units (eg years)

  Specified by:

  buildDescendentPALNodeBase in interface ConstrainedNode

  Returns:

  A normal PAL node

• buildDescendentPALNodeES

  public final Node buildDescendentPALNodeES​(ConstraintModel.GroupManager groupManager)

  Description copied from interface: ConstrainedNode
  Build node with Expected Substitution Units

  Specified by:

  buildDescendentPALNodeES in interface ConstrainedNode

  Parameters:

  groupManager - The constraints object to do the conversion with

  Returns:

  A normal PAL node

• getMinimumLeafChildSeperation

  public final double getMinimumLeafChildSeperation​(double parentHeight)

  Specified by:

  getMinimumLeafChildSeperation in interface ConstrainedNode

• rebuildDescendentPattern

  public void rebuildDescendentPattern​(GeneralConstructionTool tool)

• getDescendentPatternInfo

  public PatternInfo getDescendentPatternInfo​(GeneralConstructionTool tool)

  Specified by:

  getDescendentPatternInfo in interface ConstrainedNode

• getSubTreeComponents

  public void getSubTreeComponents​(java.util.ArrayList store,
                                   java.lang.Class componentType)

  Specified by:

  getSubTreeComponents in interface ConstrainedNode

• getNonSubTreeComponents

  public void getNonSubTreeComponents​(java.util.ArrayList store,
                                      java.lang.Class componentType)

  Specified by:

  getNonSubTreeComponents in interface ConstrainedNode

• getAllComponents

  public void getAllComponents​(java.util.ArrayList store,
                               java.lang.Class componentType)

  Specified by:

  getAllComponents in interface GeneralTreeComponent

• getNodeHeight

  public final double getNodeHeight()

  Specified by:

  getNodeHeight in interface ConstrainedNode

• getMinimumChildSeperation

  public double getMinimumChildSeperation​(double currentSeperation)

  Specified by:

  getMinimumChildSeperation in interface ConstrainedNode

• obtainLeafInformation

  public void obtainLeafInformation​(HeightInformationUser user)

  Description copied from interface: ConstrainedNode
  Obtain information regarding the current state of the leaf heights (called when first constructed). The resulting heights will, for exampled, be averaged across components and then used as the starting height values (see setLeafHeights...())

  Specified by:

  obtainLeafInformation in interface ConstrainedNode

  Parameters:

  user - An object that uses the height information

• getDescendentExtendedConditionals

  public ConditionalProbabilityStore getDescendentExtendedConditionals​(double extensionHeight,
                                                                       GeneralConstructionTool tool,
                                                                       boolean allowCaching)

  Specified by:

  getDescendentExtendedConditionals in interface ConstrainedNode

• getDescendentExtendedConditionalsWithAdjustedInternalHeights

  public ConditionalProbabilityStore getDescendentExtendedConditionalsWithAdjustedInternalHeights​(double extensionHeight,
                                                                                                  GeneralConstructionTool tool,
                                                                                                  ConstrainedNode.HeightAdjustment internalNodeHeightAdjuster,
                                                                                                  boolean allowCaching)

  Specified by:

  getDescendentExtendedConditionalsWithAdjustedInternalHeights in interface ConstrainedNode

• getDescendentFlatConditionals

  public ConditionalProbabilityStore getDescendentFlatConditionals​(GeneralConstructionTool tool,
                                                                   boolean allowCaching)

  Specified by:

  getDescendentFlatConditionals in interface ConstrainedNode

• testLikelihood

  public void testLikelihood​(GeneralConstructionTool tool)

  Specified by:

  testLikelihood in interface ConstrainedNode

• toString

  public java.lang.String toString​(FreeBranch caller)