Package pal.supgma
Interface RateHandler
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public interface RateHandler
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Nested Class Summary
Nested Classes Modifier and Type Interface Description static classRateHandler.Utils
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description voidadjustDistances(double[][] matrix, TimeOrderCharacterData tocd)voidfillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)MutationRateModel.FactorygenerateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)java.lang.StringgetInfo()intgetNumberOfParameters(TimeOrderCharacterData tocd)booleanisCICompatible()
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Method Detail
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getNumberOfParameters
int getNumberOfParameters(TimeOrderCharacterData tocd)
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adjustDistances
void adjustDistances(double[][] matrix, TimeOrderCharacterData tocd)
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isCICompatible
boolean isCICompatible()
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getInfo
java.lang.String getInfo()
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fillInLSInfo
void fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)
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generateRateModelFactory
MutationRateModel.Factory generateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)
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