Uses of Interface pal.substmodel.RateMatrixGroup

Packages that use RateMatrixGroup
Package	Description
pal.eval	Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.
pal.substmodel	Classes describing substitution models, i.e.

Methods in pal.eval with parameters of type RateMatrixGroup
Modifier and Type	Method	Description
`static MolecularClockLikelihoodModel.Instance`	SingleSplitMolecularClockLikelihoodModel.`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double splitTime)`
`static MolecularClockLikelihoodModel.Instance`	SingleSplitMolecularClockLikelihoodModel.`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double[] classProbabilities, double splitTime)`
`static MolecularClockLikelihoodModel.Instance`	SingleSplitMolecularClockLikelihoodModel.`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime)`
`static MolecularClockLikelihoodModel.Instance`	SingleSplitMolecularClockLikelihoodModel.`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime)`

Classes in pal.substmodel that implement RateMatrixGroup
Modifier and Type	Class	Description
`class`	`NeutralSelectionRateMatrixGroup`
`class`	`PositiveSelectionRateMatrixGroup`
`class`	`SimpleRateMatrixGroup`

Uses of Interfacepal.substmodel.RateMatrixGroup