NeoParameterized

All Known Subinterfaces:

SingleSplitDistribution

All Known Implementing Classes:

ConstantIndependentSingleSplitDistribution, FixedBSRDTGlobalClockModel, GlobalClockModel, MRDTGlobalClockModel, MultiRateMatrixHandler, ParameterizedDoubleBundle, ParameterizedNeoWrapper, SaturatedSingleSplitDistribution, SRDTGlobalClockModel, VariableIndependentSingleSplitDistribution
```
public interface NeoParameterized
```
interface for class with (optimizable) parameters. A replacement for the Parameterized interface with it's irritating updating of one parameter at a time

Version:

$Id: NeoParameterized.java,v 1.1 2004/08/02 05:22:04 matt Exp $

Author:

Korbinian Strimmer, Matthew Goode

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`getDefaultValues(double[] store, int startIndex)`	get default value parameter values
`double`	`getLowerLimit(int n)`	get lower parameter limit
`int`	`getNumberOfParameters()`	get number of parameters
`void`	`getParameters(double[] parameterStore, int startIndex)`	get model parameter
`double`	`getUpperLimit(int n)`	get upper parameter limit
`void`	`setParameters(double[] parameters, int startIndex)`	set model parameter

- Method Detail
  - getNumberOfParameters
```
int getNumberOfParameters()
```
    get number of parameters
    
    Returns:
    
    number of parameters
  - setParameters
```
void setParameters(double[] parameters,
                   int startIndex)
```
    set model parameter
    
    Parameters:
    
    parameters - the array holding the parameters
    
    startIndex - the index into the array that the related parameters start at
  - getParameters
```
void getParameters(double[] parameterStore,
                   int startIndex)
```
    get model parameter
    
    Parameters:
    
    parameters - the array holding the parameters
    
    startIndex - the index into the array that the related parameters start at
  - getLowerLimit
```
double getLowerLimit(int n)
```
    get lower parameter limit
    
    Parameters:
    
    n - parameter number
    
    Returns:
    
    lower bound
  - getUpperLimit
```
double getUpperLimit(int n)
```
    get upper parameter limit
    
    Parameters:
    
    n - parameter number
    
    Returns:
    
    upper bound
  - getDefaultValues
```
void getDefaultValues(double[] store,
                      int startIndex)
```
    get default value parameter values