LikelihoodSummary

java.lang.Object
- pal.eval.LikelihoodSummary

All Implemented Interfaces:: java.io.Serializable

public class LikelihoodSummary
extends java.lang.Object
implements java.io.Serializable

See Also:: Serialized Form

Constructor Summary

Constructors
Constructor	Description
`LikelihoodSummary(DataType dt, double overallLogLikelihood, double[] categoryProbabilities, double[][] individualLikelihoods, int[] sitePatternMatchup)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int[]`	`generateCategoryRanking(int site)`
`int[][]`	`generateCategoryRankings()`
`double[]`	`generateSiteLikelihoods(int site)`
`double[]`	`generateSitePosteriors(int site)`
`double`	`getOverallLogLikelihood()`
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - LikelihoodSummary
```
public LikelihoodSummary(DataType dt,
                         double overallLogLikelihood,
                         double[] categoryProbabilities,
                         double[][] individualLikelihoods,
                         int[] sitePatternMatchup)
```
    Parameters:
    
    dt - The data type used (for reference)
    
    overallLogLikelihood - (the overall log likelihood found)
    
    categoryProbabilities - (the probabilities of each category ([1] if not separate categories)
    
    individualLikelihoods - The individual likelihoods of each pattern/category (organised [site][category])
    
    sitePatternMatchup - for each site indicates which is the related pattern (it is assumed categoryProbabilities given with regard to patterns, if not sitePatternMatchup should contain {0,1,2, ... numberOfSites-1)
- Method Detail
  - getOverallLogLikelihood
```
public final double getOverallLogLikelihood()
```
  - generateCategoryRankings
```
public final int[][] generateCategoryRankings()
```
  - generateSiteLikelihoods
```
public final double[] generateSiteLikelihoods(int site)
```
  - generateSitePosteriors
```
public final double[] generateSitePosteriors(int site)
```
  - generateCategoryRanking
```
public final int[] generateCategoryRanking(int site)
```
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object