Uses of Interface
pal.algorithmics.StoppingCriteria.Factory
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Packages that use StoppingCriteria.Factory Package Description pal.algorithmics pal.treesearch -
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Uses of StoppingCriteria.Factory in pal.algorithmics
Methods in pal.algorithmics that return StoppingCriteria.Factory Modifier and Type Method Description static StoppingCriteria.FactoryStoppingCriteria.Utils. getCombined(StoppingCriteria.Factory[] subCriteria)A stopping criteria that is a composite of a set of criteria, stops when at least one sub criteria wants to stopstatic StoppingCriteria.FactoryStoppingCriteria.Utils. getIterationCount(int maxIterationCount)A stopping criteria that stops after a set number of iterationsstatic StoppingCriteria.FactoryStoppingCriteria.Utils. getNonExactUnchangedScore(int maxIterationCountAtCurrentScore, boolean matchBestScore, double tolerance)A stopping criteria that works by counting how many iterations occur at a given score (either the best score or the current score) and stopping when score does not change after a set number of generationsstatic StoppingCriteria.FactoryStoppingCriteria.Utils. getUnchangedScore(int maxIterationCountAtCurrentScore, boolean matchBestScore)A stopping criteria that works by counting how many iterations occur at a given score (either the best score or the current score) and stopping when score does not change after a set number of generationsMethods in pal.algorithmics with parameters of type StoppingCriteria.Factory Modifier and Type Method Description static StoppingCriteria.FactoryStoppingCriteria.Utils. getCombined(StoppingCriteria.Factory[] subCriteria)A stopping criteria that is a composite of a set of criteria, stops when at least one sub criteria wants to stopvoidSearchEngine. run(AlgorithmCallback callback, double initialScore, ObjectState subject, StoppingCriteria.Factory stoppingCriteria, Ranker ranker) -
Uses of StoppingCriteria.Factory in pal.treesearch
Methods in pal.treesearch with parameters of type StoppingCriteria.Factory Modifier and Type Method Description UndoableActionUnrootedMLSearcher. getBranchLengthOptimiseAction(StoppingCriteria.Factory stopper)UndoableActionUnrootedMLSearcher. getBranchLengthWithModelOptimiseAction(StoppingCriteria.Factory stopper, MultivariateMinimum minimiser, int fxFracDigits, int xFracDigits)UndoableActionUnrootedMLSearcher. getFullSweepSPRAction(StoppingCriteria.Factory stopper)UndoableActionUnrootedMLSearcher. getNNIAction(StoppingCriteria.Factory stopper)UndoableActionUnrootedMLSearcher. getNNIBranchLengthOptimiseAction(StoppingCriteria.Factory stopper)AssessorUnrootedMLSearcher. getSimpleAssessor(StoppingCriteria.Factory stopper)UndoableActionUnrootedMLSearcher. getSPRAction(StoppingCriteria.Factory stopper)UndoableActionUnrootedMLSearcher. getSweepSPRAction(StoppingCriteria.Factory stopper)
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