List of all members.
Public Member Functions |
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| EigenDecomposition (int decompositionCount, int stateCount, int categoryCount, long flags) |
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virtual void | setEigenDecomposition (int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues)=0 |
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virtual void | updateTransitionMatrices (int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count)=0 |
Protected Attributes |
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REALTYPE ** | gEigenValues |
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int | kStateCount |
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int | kEigenDecompCount |
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int | kCategoryCount |
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long | kFlags |
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REALTYPE * | matrixTmp |
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REALTYPE * | firstDerivTmp |
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REALTYPE * | secondDerivTmp |
The documentation for this class was generated from the following file:
