beagle::cpu::BeagleCPU4StateSSEImpl Member List

This is the complete list of members for beagle::cpu::BeagleCPU4StateSSEImpl, including all inherited members.

calcEdgeLogLikelihoods(const int parentBufferIndex, const int childBufferIndex, const int probabilityIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcPartialsPartials(REALTYPE *destP, const REALTYPE *partials1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcPartialsPartialsAutoScaling(REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, int *activateScaling) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcPartialsPartialsFixedScaling(REALTYPE *destP, const REALTYPE *child0Partials, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcRootLogLikelihoods(const int bufferIndex, const int categoryWeightsIndex, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcRootLogLikelihoodsMulti(const int *bufferIndices, const int *categoryWeightsIndices, const int *stateFrequenciesIndices, const int *scaleBufferIndices, int count, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcStatesPartials(REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const REALTYPE *partials2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcStatesPartialsFixedScaling(REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const REALTYPE *child1Partials, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcStatesStates(REALTYPE *destP, const int *states1, const REALTYPE *matrices1, const int *states2, const REALTYPE *matrices2) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
calcStatesStatesFixedScaling(REALTYPE *destP, const int *child0States, const REALTYPE *child0TransMat, const int *child1States, const REALTYPE *child1TransMat, const REALTYPE *scaleFactors) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
getName() (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
integrateOutStatesAndScale(const REALTYPE *integrationTmp, const int stateFrequenciesIndex, const int scalingFactorsIndex, double *outSumLogLikelihood) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	inline
rescalePartials(REALTYPE *destP, REALTYPE *scaleFactors, REALTYPE *cumulativeScaleFactors, const int fillWithOnes) (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual
~BeagleCPU4StateImpl() (defined in beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >)	beagle::cpu::BeagleCPU4StateImpl< BEAGLE_CPU_GENERIC >	virtual