#! /bin/sh
#
#     Copyright (C) 2005  Brendan Cully <brendan@kublai.com>
# 
#     This program is free software; you can redistribute it and/or modify
#     it under the terms of the GNU General Public License as published by
#     the Free Software Foundation; either version 2 of the License, or
#     (at your option) any later version.
# 
#     This program is distributed in the hope that it will be useful,
#     but WITHOUT ANY WARRANTY; without even the implied warranty of
#     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#     GNU General Public License for more details.
# 
#     You should have received a copy of the GNU General Public License
#     along with this program; if not, write to the Free Software Foundation,
#     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301,, USA.
#
# $Id: m_vcf.sh.in,v 1.2 2005-10-29 22:30:26 roland Exp $

m_vcf_query()
{
  VCQ=${prefix}/lib/lbdb/vcquery

  QUERY="$1"

  for file in $VCF_FILES
  do
    if test -r $file.cache -a $file.cache -nt $file
    then
      cmd="cat $file.cache"
    else
      if $VCQ $file > $file.cache
      then
        cmd="cat $file.cache"
      else
        cmd="$VCQ $file"
      fi
    fi

    $cmd | grep -i "$QUERY" | (
      while read match
      do
        echo "$match	(VCF)"
      done
    )
  done
}
