Field Detail

• vwr

  private Viewer vwr

• eval

  private ScriptEval eval

• evalTemp

  private JmolScriptEvaluator evalTemp

• queueThreads

  private Thread[] queueThreads

• scriptQueueRunning

  private boolean[] scriptQueueRunning

• commandWatcherThread

  private JmolThread commandWatcherThread

• scriptQueue

  public javajs.util.Lst<javajs.util.Lst<Object>> scriptQueue

• useCommandWatcherThread

  private boolean useCommandWatcherThread

• scriptIndex

  private int scriptIndex

• isScriptQueued

  private boolean isScriptQueued

• prevCovalentVersion

  private static int prevCovalentVersion

Constructor Detail

• ScriptManager

  public ScriptManager()

Method Detail

• getScriptQueue

  public javajs.util.Lst<javajs.util.Lst<Object>> getScriptQueue()

  Specified by:

  getScriptQueue in interface JmolScriptManager

• isScriptQueued

  public boolean isScriptQueued()

  Specified by:

  isScriptQueued in interface JmolScriptManager

• setViewer

  public JmolScriptEvaluator setViewer(Viewer vwr)

  Specified by:

  setViewer in interface JmolScriptManager

• newScriptEvaluator

  private ScriptEval newScriptEvaluator()

• clear

  public void clear(boolean isAll)

  Specified by:

  clear in interface JmolScriptManager

• addScript

  public String addScript(String strScript,
                          boolean isQuiet)

  Specified by:

  addScript in interface JmolScriptManager

• addScr

  private Object addScr(String returnType,
                        String strScript,
                        String statusList,
                        boolean isQuiet)

• clearQueue

  public void clearQueue()

  Specified by:

  clearQueue in interface JmolScriptManager

• waitForQueue

  public void waitForQueue()

  Specified by:

  waitForQueue in interface JmolScriptManager

• isQueueProcessing

  public boolean isQueueProcessing()

  Specified by:

  isQueueProcessing in interface JmolScriptManager

• flushQueue

  private void flushQueue(String command)

• startScriptQueue

  private void startScriptQueue(boolean startedByCommandWatcher)

• getScriptItem

  public javajs.util.Lst<Object> getScriptItem(boolean watching,
                                               boolean isByCommandWatcher)

  Specified by:

  getScriptItem in interface JmolScriptManager

• startCommandWatcher

  public void startCommandWatcher(boolean isStart)

  Specified by:

  startCommandWatcher in interface JmolScriptManager

• interruptQueueThreads

  void interruptQueueThreads()

• clearCommandWatcherThread

  public void clearCommandWatcherThread()

• queueThreadFinished

  public void queueThreadFinished(int pt)

  Specified by:

  queueThreadFinished in interface JmolScriptManager

• runScriptNow

  public void runScriptNow()

• evalFile

  public String evalFile(String strFilename)

  Specified by:

  evalFile in interface JmolScriptManager

• evalStringWaitStatusQueued

  public Object evalStringWaitStatusQueued(String returnType,
                                           String strScript,
                                           String statusList,
                                           boolean isQuiet,
                                           boolean isQueued)

  Specified by:

  evalStringWaitStatusQueued in interface JmolScriptManager

• checkScriptExecution

  private String checkScriptExecution(String strScript,
                                      boolean isInsert)

• checkResume

  private boolean checkResume(String str)

• checkStepping

  private boolean checkStepping(String str)

• evalStringQuietSync

  public String evalStringQuietSync(String strScript,
                                    boolean isQuiet,
                                    boolean allowSyncScript)

  Specified by:

  evalStringQuietSync in interface JmolScriptManager

• checkHalt

  public boolean checkHalt(String str,
                           boolean isInsert)

  Specified by:

  checkHalt in interface JmolScriptManager

• getAtomBitSetEval

  public BS getAtomBitSetEval(JmolScriptEvaluator eval,
                              Object atomExpression)

  Specified by:

  getAtomBitSetEval in interface JmolScriptManager

• scriptCheckRet

  public Object scriptCheckRet(String strScript,
                               boolean returnContext)

  Specified by:

  scriptCheckRet in interface JmolScriptManager

• openFileAsync

  public void openFileAsync(String fileName,
                            int flags)

  From file dropping.

  Specified by:

  openFileAsync in interface JmolScriptManager

  Parameters:

  fileName -

  flags - 1=pdbCartoons, 2=no scripting, 4=append

• getDragDropFileTypeName

  private String getDragDropFileTypeName(String fileName)

• getZipDirectoryAsString

  private String getZipDirectoryAsString(String fileName)

• setStateScriptVersion

  public static void setStateScriptVersion(Viewer vwr,
                                           String version)

• addHydrogensInline

  public BS addHydrogensInline(BS bsAtoms,
                               javajs.util.Lst<Atom> vConnections,
                               javajs.util.P3[] pts)
                        throws Exception

  Specified by:

  addHydrogensInline in interface JmolScriptManager

  Throws:

  Exception