class Ras3DReader extends PolygonFileReader
| Modifier and Type | Field and Description |
|---|---|
private boolean |
asQuads |
(package private) Map<String,Integer> |
htVertices |
private int |
nPolygons |
private String |
pmeshError |
private String |
type |
nTriangles, nVerticesallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor and Description |
|---|
Ras3DReader() |
| Modifier and Type | Method and Description |
|---|---|
private int |
getPoint(String[] tokens,
int i) |
(package private) void |
getSurfaceData() |
(package private) void |
init2(SurfaceGenerator sg,
BufferedReader br) |
protected void |
init2PR(SurfaceGenerator sg,
BufferedReader br) |
private boolean |
readVertices() |
protected boolean |
readVerticesAndPolygons() |
protected void |
setHeader() |
init2PFR, readSurfaceData, readVolumeData, readVolumeParameterscloseReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipToaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprivate String pmeshError
private String type
private boolean asQuads
private int nPolygons
void init2(SurfaceGenerator sg, BufferedReader br)
init2 in class SurfaceFileReaderprotected void init2PR(SurfaceGenerator sg, BufferedReader br)
protected void setHeader()
void getSurfaceData()
throws Exception
getSurfaceData in class PolygonFileReaderExceptionprotected boolean readVerticesAndPolygons()
private int getPoint(String[] tokens, int i)