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| Packages that use jebl.evolution.trees | |
|---|---|
| jebl.evolution.align | Provides classes and interfaces for pairwise alignment of two sequences. |
| jebl.evolution.coalescent | |
| jebl.evolution.io | |
| jebl.evolution.parsimony | |
| jebl.evolution.treemetrics | |
| jebl.evolution.trees | |
| jebl.evolution.treesimulation | |
| Classes in jebl.evolution.trees used by jebl.evolution.align | |
|---|---|
| RootedTree
A tree with a root (node with maximum height). |
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| Tree
A rooted or unrooted tree. |
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| TreeBuilderFactory.DistanceModel
Supported pairwise distance methods |
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| TreeBuilderFactory.Method
Supported methods for tree building |
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| Classes in jebl.evolution.trees used by jebl.evolution.coalescent | |
|---|---|
| RootedTree
A tree with a root (node with maximum height). |
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| Classes in jebl.evolution.trees used by jebl.evolution.io | |
|---|---|
| Tree
A rooted or unrooted tree. |
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| Classes in jebl.evolution.trees used by jebl.evolution.parsimony | |
|---|---|
| Tree
A rooted or unrooted tree. |
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| Classes in jebl.evolution.trees used by jebl.evolution.treemetrics | |
|---|---|
| RootedTree
A tree with a root (node with maximum height). |
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| Classes in jebl.evolution.trees used by jebl.evolution.trees | |
|---|---|
| CladeSystem
Stores a set of unique clades for a tree |
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| ClusteringTreeBuilder
An abstract base class for clustering algorithms from pairwise distances |
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| ConsensusTreeBuilder
A TreeBuilder that builds a consensus tree for a set of trees on identical leaf sets. |
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| ConsensusTreeBuilder.Method
Supported consensus methods. |
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| FilteredRootedTree
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| ReRootedTree.RootingType
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| RootedTree
A tree with a root (node with maximum height). |
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| SortedRootedTree.BranchOrdering
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| SplitSystem
data structure for a set of splits |
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| TransformedRootedTree.Transform
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| Tree
A rooted or unrooted tree. |
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| TreeBiPartitionInfo
Work in progress |
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| TreeBiPartitionInfo.DistanceNorm
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| TreeBuilder
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| TreeBuilderFactory.ConsensusMethod
Supported consensus methods. |
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| TreeBuilderFactory.DistanceModel
Supported pairwise distance methods |
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| TreeBuilderFactory.Method
Supported methods for tree building |
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| TreeChangeEvent
Represents a change to a tree. |
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| TreeSelectionChangeEvent
Represents a change to the selected nodes in a tree. |
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| Classes in jebl.evolution.trees used by jebl.evolution.treesimulation | |
|---|---|
| RootedTree
A tree with a root (node with maximum height). |
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