jebl.evolution.trees
Class SortedRootedTree

java.lang.Object
  jebl.evolution.trees.FilteredRootedTree
      jebl.evolution.trees.SortedRootedTree

All Implemented Interfaces:

Graph, RootedTree, Tree, Attributable

public class SortedRootedTree
extends FilteredRootedTree

Version:

$Id: SortedRootedTree.java 627 2007-01-15 03:50:40Z pepster $

Author:

Andrew Rambaut, Alexei Drummond

Nested Class Summary

static class

SortedRootedTree.BranchOrdering

Nested classes/interfaces inherited from interface jebl.evolution.graphs.Graph

Graph.NoEdgeException, Graph.Utils

Constructor Summary

SortedRootedTree(RootedTree source, java.util.Comparator<Node> comparator)

SortedRootedTree(RootedTree source, SortedRootedTree.BranchOrdering branchOrdering)

Method Summary

java.util.List<Node>

getChildren(Node node)

Methods inherited from class jebl.evolution.trees.FilteredRootedTree

conceptuallyUnrooted, getAdjacencies, getAttribute, getAttributeMap, getAttributeNames, getEdge, getEdgeLength, getEdges, getEdges, getExternalEdges, getExternalNodes, getHeight, getInternalEdges, getInternalNodes, getLength, getNode, getNodes, getNodes, getNodes, getParent, getRootNode, getSource, getTaxa, getTaxon, hasHeights, hasLengths, isExternal, isRoot, removeAttribute, renameTaxa, setAttribute

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SortedRootedTree

public SortedRootedTree(RootedTree source,
                        SortedRootedTree.BranchOrdering branchOrdering)

SortedRootedTree

public SortedRootedTree(RootedTree source,
                        java.util.Comparator<Node> comparator)

Method Detail

getChildren

public java.util.List<Node> getChildren(Node node)

Specified by:

getChildren in interface RootedTree

Overrides:

getChildren in class FilteredRootedTree

Parameters:

node - the node whose children are being requested.

Returns:

the list of nodes that are the children of the given node. The set may be empty for a terminal node (a tip).