jebl.evolution.trees
Class NeighborJoiningTreeBuilder

java.lang.Object
  jebl.evolution.trees.ClusteringTreeBuilder<Tree>
      jebl.evolution.trees.NeighborJoiningTreeBuilder

All Implemented Interfaces:

TreeBuilder<Tree>

public class NeighborJoiningTreeBuilder
extends ClusteringTreeBuilder<Tree>

Constructs an unrooted tree by neighbor-joining using pairwise distances. Adapted from BEAST code.

Version:

$Id: NeighborJoiningTreeBuilder.java 855 2007-12-11 04:04:18Z twobeers $

Author:

Andrew Rambaut, Alexei Drummond, Joseph Heled

Constructor Summary

NeighborJoiningTreeBuilder(DistanceMatrix distanceMatrix)
construct NJ tree

Method Summary

Methods inherited from class jebl.evolution.trees.ClusteringTreeBuilder

addProgressListener, build, fireSetProgress, getBuilder, removeProgressListener

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NeighborJoiningTreeBuilder

public NeighborJoiningTreeBuilder(DistanceMatrix distanceMatrix)

construct NJ tree

Parameters:

distanceMatrix - distance matrix