jebl.evolution.substmodel
Class AminoAcidModel

java.lang.Object
  jebl.evolution.substmodel.AbstractRateMatrix
      jebl.evolution.substmodel.AminoAcidModel

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, RateMatrix

Direct Known Subclasses:

WAG

public abstract class AminoAcidModel
extends AbstractRateMatrix

base class of rate matrices for amino acids

Version:

$Id: AminoAcidModel.java 185 2006-01-23 23:03:18Z rambaut $

Author:

Korbinian Strimmer

See Also:

Serialized Form

Method Summary

Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix

getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface jebl.evolution.substmodel.RateMatrix

getUniqueName