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| Packages that use jebl.evolution.io | |
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| jebl.evolution.align | Provides classes and interfaces for pairwise alignment of two sequences. |
| jebl.evolution.io | |
| jebl.evolution.trees | |
| Classes in jebl.evolution.io used by jebl.evolution.align | |
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| ImportException
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| Classes in jebl.evolution.io used by jebl.evolution.io | |
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| AlignmentExporter
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| AlignmentImporter
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| ByteBuilder
Similar to a StringBuilder, but its internal buffer is a byte[] with one entry for each character, so it can only correctly append single-byte characters. |
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| DistanceMatrixImporter
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| DistanceMatrixImporter.Triangle
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| IllegalCharacterPolicy
What to do when an imported document contains illegal characters |
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| ImmediateSequenceImporter
A sequence importer sending the sequences back one by one, which makes it possible to import larger documents if handled wisely on the other side. |
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| ImmediateSequenceImporter.Callback
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| ImportException
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| NexusImporter.NexusBlock
Represents the block types used in the nexus format |
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| SequenceExporter
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| SequenceImporter
Interface for importers that do sequences |
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| TreeExporter
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| TreeImporter
Interface for importers that do trees |
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| Classes in jebl.evolution.io used by jebl.evolution.trees | |
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| ImportException
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| NexusImporter
Class for importing NEXUS file format. |
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