jebl.evolution.distances
Class F84DistanceMatrix

java.lang.Object
  jebl.evolution.distances.BasicDistanceMatrix
      jebl.evolution.distances.F84DistanceMatrix

All Implemented Interfaces:

DistanceMatrix

public class F84DistanceMatrix
extends BasicDistanceMatrix

Version:

$Id: F84DistanceMatrix.java 1036 2009-11-17 03:45:48Z matt_kearse $ See the detailed comment in HKYDistanceMatrix on the model and the formula used for estimating the distance.

Author:

Joseph Heled

Constructor Summary

F84DistanceMatrix(Alignment alignment)

F84DistanceMatrix(Alignment alignment, ProgressListener progress)

Method Summary

Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix

getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

F84DistanceMatrix

public F84DistanceMatrix(Alignment alignment,
                         ProgressListener progress)

F84DistanceMatrix

public F84DistanceMatrix(Alignment alignment)