Uses of Package
htsjdk.samtools.sra

Packages that use htsjdk.samtools.sra

Package	Description
htsjdk.samtools
htsjdk.samtools.sra

Classes in htsjdk.samtools.sra used by htsjdk.samtools

Class and Description
ReferenceCache That is a thread-safe wrapper for a list of cache Reference objects.
SRAAccession Describes a single SRA accession for SRA read collection Also provides app string functionality and allows to check if working SRA is supported on the running platform Important: due to checks performed in SRAAccession.isValid(), we won't recognise any accessions other than ones that follow the pattern "^[SED]RR[0-9]{6,9}$", e.g.

Classes in htsjdk.samtools.sra used by htsjdk.samtools.sra

Class and Description
ReferenceCache That is a thread-safe wrapper for a list of cache Reference objects.
SRAAccession Describes a single SRA accession for SRA read collection Also provides app string functionality and allows to check if working SRA is supported on the running platform Important: due to checks performed in SRAAccession.isValid(), we won't recognise any accessions other than ones that follow the pattern "^[SED]RR[0-9]{6,9}$", e.g.