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itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet > Class Template Reference

#include <itkStatisticalShapePointPenalty.h>

Detailed Description

template<class TFixedPointSet, class TMovingPointSet>
class itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >

Computes the Mahalanobis distance between the transformed shape and a mean shape. A model mean and covariance are required.

Author
F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands
Note
This work was funded by the projects Care4Me and Mediate.
If you use the StatisticalShapePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013), http://dx.doi.org/10.1016/j.cviu.2012.12.006

Definition at line 57 of file itkStatisticalShapePointPenalty.h.

+ Inheritance diagram for itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >:

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef OutputPointType::CoordRepType CoordRepType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef Superclass::DerivativeValueType DerivativeValueType
 
typedef Superclass::FixedPointSetConstPointer FixedPointSetConstPointer
 
typedef Superclass::FixedPointSetType FixedPointSetType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::MeasureType MeasureType
 
typedef Superclass::MovingPointSetConstPointer MovingPointSetConstPointer
 
typedef Superclass::MovingPointSetType MovingPointSetType
 
typedef Superclass::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef vnl_svd_economy< CoordRepType > PCACovarianceType
 
typedef Superclass::PointDataIterator PointDataIterator
 
typedef SmartPointer< Self > Pointer
 
typedef Superclass::PointIterator PointIterator
 
typedef std::vector< VnlVectorType *> ProposalDerivativeType
 
typedef StatisticalShapePointPenalty Self
 
typedef SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet > Superclass
 
typedef Superclass::TransformJacobianType TransformJacobianType
 
typedef Superclass::TransformParametersType TransformParametersType
 
typedef Superclass::TransformPointer TransformPointer
 
typedef Superclass::TransformType TransformType
 
typedef vnl_matrix< CoordRepType > VnlMatrixType
 
typedef vnl_vector< CoordRepType > VnlVectorType
 
- Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::ParametersValueType CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef FixedImageMaskType::ConstPointer FixedImageMaskConstPointer
 
typedef FixedImageMaskType::Pointer FixedImageMaskPointer
 
typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) > FixedImageMaskType
 
typedef FixedPointSetType::ConstPointer FixedPointSetConstPointer
 
typedef FixedPointSetType::PixelType FixedPointSetPixelType
 
typedef TFixedPointSet FixedPointSetType
 
typedef TransformType::InputPointType InputPointType
 
typedef Superclass::MeasureType MeasureType
 
typedef MovingImageMaskType::ConstPointer MovingImageMaskConstPointer
 
typedef MovingImageMaskType::Pointer MovingImageMaskPointer
 
typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) > MovingImageMaskType
 
typedef MovingPointSetType::ConstPointer MovingPointSetConstPointer
 
typedef MovingPointSetType::PixelType MovingPointSetPixelType
 
typedef TMovingPointSet MovingPointSetType
 
typedef TransformType::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef TransformType::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef FixedPointSetType::PointDataContainer::ConstIterator PointDataIterator
 
typedef SmartPointer< Self > Pointer
 
typedef FixedPointSetType::PointsContainer::ConstIterator PointIterator
 
typedef SingleValuedPointSetToPointSetMetric Self
 
typedef SingleValuedCostFunction Superclass
 
typedef TransformType::JacobianType TransformJacobianType
 
typedef TransformType::ParametersType TransformParametersType
 
typedef TransformType::Pointer TransformPointer
 
typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) > TransformType
 

Public Member Functions

virtual void BaseVarianceNeedsUpdateOff ()
 
virtual void BaseVarianceNeedsUpdateOn ()
 
virtual MeasureType GetBaseVariance ()
 
virtual MeasureType GetCentroidXVariance ()
 
virtual MeasureType GetCentroidYVariance ()
 
virtual MeasureType GetCentroidZVariance ()
 
virtual const char * GetClassName () const
 
virtual MeasureType GetCutOffSharpness ()
 
virtual MeasureType GetCutOffValue ()
 
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
 
virtual const bool & GetNormalizedShapeModel ()
 
virtual const int & GetShapeModelCalculation ()
 
virtual MeasureType GetShrinkageIntensity ()
 
virtual MeasureType GetSizeVariance ()
 
MeasureType GetValue (const TransformParametersType &parameters) const
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
 
void Initialize (void) throw ( ExceptionObject )
 
virtual void NormalizedShapeModelOff ()
 
virtual void NormalizedShapeModelOn ()
 
virtual void SetBaseVariance (MeasureType _arg)
 
virtual void SetBaseVarianceNeedsUpdate (bool _arg)
 
virtual void SetCentroidXVariance (MeasureType _arg)
 
virtual void SetCentroidYVariance (MeasureType _arg)
 
virtual void SetCentroidZVariance (MeasureType _arg)
 
virtual void SetCovarianceMatrix (const vnl_matrix< double > *_arg)
 
virtual void SetCutOffSharpness (MeasureType _arg)
 
virtual void SetCutOffValue (MeasureType _arg)
 
virtual void SetEigenValues (const vnl_vector< double > *_arg)
 
virtual void SetEigenVectors (const vnl_matrix< double > *_arg)
 
virtual void SetMeanVector (const vnl_vector< double > *_arg)
 
virtual void SetNormalizedShapeModel (bool _arg)
 
virtual void SetShapeModelCalculation (int _arg)
 
virtual void SetShrinkageIntensity (MeasureType _arg)
 
virtual void SetShrinkageIntensityNeedsUpdate (bool _arg)
 
virtual void SetSizeVariance (MeasureType _arg)
 
virtual void SetVariancesNeedsUpdate (bool _arg)
 
virtual void ShrinkageIntensityNeedsUpdateOff ()
 
virtual void ShrinkageIntensityNeedsUpdateOn ()
 
virtual void VariancesNeedsUpdateOff ()
 
virtual void VariancesNeedsUpdateOn ()
 
- Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const FixedImageMaskType * GetFixedImageMask ()
 
virtual const FixedPointSetType * GetFixedPointSet ()
 
virtual const MovingImageMaskType * GetMovingImageMask ()
 
virtual const MovingPointSetType * GetMovingPointSet ()
 
unsigned int GetNumberOfParameters (void) const
 
virtual const TransformType * GetTransform ()
 
virtual const bool & GetUseMetricSingleThreaded ()
 
 itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)
 
 itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)
 
virtual void SetFixedImageMask (const FixedImageMaskType *_arg)
 
virtual void SetFixedPointSet (const FixedPointSetType *_arg)
 
virtual void SetMovingImageMask (const MovingImageMaskType *_arg)
 
virtual void SetMovingPointSet (const MovingPointSetType *_arg)
 
virtual void SetTransform (TransformType *_arg)
 
void SetTransformParameters (const ParametersType &parameters) const
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void PrintSelf (std::ostream &os, Indent indent) const
 
 StatisticalShapePointPenalty ()
 
virtual ~StatisticalShapePointPenalty ()
 
- Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void PrintSelf (std::ostream &os, Indent indent) const
 
 SingleValuedPointSetToPointSetMetric ()
 
virtual ~SingleValuedPointSetToPointSetMetric ()
 

Private Member Functions

void CalculateCutOffDerivative (typename DerivativeType::element_type &derivativeElement, const MeasureType &value) const
 
void CalculateCutOffValue (MeasureType &value) const
 
void CalculateDerivative (DerivativeType &derivative, const MeasureType &value, const VnlVectorType &differenceVector, const VnlVectorType &centerrotated, const VnlVectorType &eigrot, const unsigned int shapeLength) const
 
void CalculateValue (MeasureType &value, VnlVectorType &differenceVector, VnlVectorType &centerrotated, VnlVectorType &eigrot) const
 
void FillProposalDerivative (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
 
void FillProposalVector (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
 
void NormalizeProposalVector (const unsigned int shapeLength) const
 
void operator= (const Self &)
 
 StatisticalShapePointPenalty (const Self &)
 
void UpdateCentroidAndAlignProposalDerivative (const unsigned int shapeLength) const
 
void UpdateCentroidAndAlignProposalVector (const unsigned int shapeLength) const
 
void UpdateL2 (const unsigned int shapeLength) const
 
void UpdateL2AndNormalizeProposalDerivative (const unsigned int shapeLength) const
 

Private Attributes

double m_BaseStd
 
double m_BaseVariance
 
bool m_BaseVarianceNeedsUpdate
 
double m_CentroidXStd
 
double m_CentroidXVariance
 
double m_CentroidYStd
 
double m_CentroidYVariance
 
double m_CentroidZStd
 
double m_CentroidZVariance
 
const VnlMatrixType * m_CovarianceMatrix
 
double m_CutOffSharpness
 
double m_CutOffValue
 
const VnlVectorType * m_EigenValues
 
VnlVectorType * m_EigenValuesRegularized
 
const VnlMatrixType * m_EigenVectors
 
VnlMatrixType * m_InverseCovarianceMatrix
 
VnlVectorType m_MeanValues
 
const VnlVectorType * m_MeanVector
 
bool m_NormalizedShapeModel
 
ProposalDerivativeType * m_ProposalDerivative
 
unsigned int m_ProposalLength
 
VnlVectorType m_ProposalVector
 
int m_ShapeModelCalculation
 
double m_ShrinkageIntensity
 
bool m_ShrinkageIntensityNeedsUpdate
 
double m_SizeStd
 
double m_SizeVariance
 
bool m_VariancesNeedsUpdate
 

Additional Inherited Members

- Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
FixedImageMaskConstPointer m_FixedImageMask
 
FixedPointSetConstPointer m_FixedPointSet
 
MovingImageMaskConstPointer m_MovingImageMask
 
MovingPointSetConstPointer m_MovingPointSet
 
unsigned int m_NumberOfPointsCounted
 
TransformPointer m_Transform
 
bool m_UseMetricSingleThreaded
 

Member Typedef Documentation

◆ ConstPointer

template<class TFixedPointSet, class TMovingPointSet>
typedef SmartPointer< const Self > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ConstPointer

Definition at line 67 of file itkStatisticalShapePointPenalty.h.

◆ CoordRepType

template<class TFixedPointSet, class TMovingPointSet>
typedef OutputPointType::CoordRepType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CoordRepType

Definition at line 97 of file itkStatisticalShapePointPenalty.h.

◆ DerivativeType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::DerivativeType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::DerivativeType

Definition at line 84 of file itkStatisticalShapePointPenalty.h.

◆ DerivativeValueType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::DerivativeValueType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::DerivativeValueType

Definition at line 85 of file itkStatisticalShapePointPenalty.h.

◆ FixedPointSetConstPointer

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::FixedPointSetConstPointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FixedPointSetConstPointer

Definition at line 88 of file itkStatisticalShapePointPenalty.h.

◆ FixedPointSetType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::FixedPointSetType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FixedPointSetType

Definition at line 86 of file itkStatisticalShapePointPenalty.h.

◆ InputPointType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::InputPointType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::InputPointType

Definition at line 94 of file itkStatisticalShapePointPenalty.h.

◆ MeasureType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::MeasureType

Definition at line 83 of file itkStatisticalShapePointPenalty.h.

◆ MovingPointSetConstPointer

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::MovingPointSetConstPointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::MovingPointSetConstPointer

Definition at line 89 of file itkStatisticalShapePointPenalty.h.

◆ MovingPointSetType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::MovingPointSetType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::MovingPointSetType

Definition at line 87 of file itkStatisticalShapePointPenalty.h.

◆ NonZeroJacobianIndicesType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::NonZeroJacobianIndicesType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NonZeroJacobianIndicesType

Definition at line 81 of file itkStatisticalShapePointPenalty.h.

◆ OutputPointType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::OutputPointType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::OutputPointType

Definition at line 95 of file itkStatisticalShapePointPenalty.h.

◆ PCACovarianceType

template<class TFixedPointSet, class TMovingPointSet>
typedef vnl_svd_economy< CoordRepType > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PCACovarianceType

Definition at line 103 of file itkStatisticalShapePointPenalty.h.

◆ PointDataIterator

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::PointDataIterator itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PointDataIterator

Definition at line 92 of file itkStatisticalShapePointPenalty.h.

◆ Pointer

template<class TFixedPointSet, class TMovingPointSet>
typedef SmartPointer< Self > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Pointer

Definition at line 66 of file itkStatisticalShapePointPenalty.h.

◆ PointIterator

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::PointIterator itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PointIterator

Definition at line 91 of file itkStatisticalShapePointPenalty.h.

◆ ProposalDerivativeType

template<class TFixedPointSet, class TMovingPointSet>
typedef std::vector< VnlVectorType * > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ProposalDerivativeType

Definition at line 101 of file itkStatisticalShapePointPenalty.h.

◆ Self

template<class TFixedPointSet, class TMovingPointSet>
typedef StatisticalShapePointPenalty itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Self

Standard class typedefs.

Definition at line 63 of file itkStatisticalShapePointPenalty.h.

◆ Superclass

template<class TFixedPointSet, class TMovingPointSet>
typedef SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Superclass

Definition at line 65 of file itkStatisticalShapePointPenalty.h.

◆ TransformJacobianType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::TransformJacobianType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformJacobianType

Definition at line 80 of file itkStatisticalShapePointPenalty.h.

◆ TransformParametersType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::TransformParametersType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformParametersType

Definition at line 79 of file itkStatisticalShapePointPenalty.h.

◆ TransformPointer

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::TransformPointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformPointer

Definition at line 78 of file itkStatisticalShapePointPenalty.h.

◆ TransformType

template<class TFixedPointSet, class TMovingPointSet>
typedef Superclass::TransformType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformType

Types transferred from the base class

Definition at line 74 of file itkStatisticalShapePointPenalty.h.

◆ VnlMatrixType

template<class TFixedPointSet, class TMovingPointSet>
typedef vnl_matrix< CoordRepType > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlMatrixType

Definition at line 99 of file itkStatisticalShapePointPenalty.h.

◆ VnlVectorType

template<class TFixedPointSet, class TMovingPointSet>
typedef vnl_vector< CoordRepType > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlVectorType

Definition at line 98 of file itkStatisticalShapePointPenalty.h.

Constructor & Destructor Documentation

◆ StatisticalShapePointPenalty() [1/2]

template<class TFixedPointSet, class TMovingPointSet>
itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::StatisticalShapePointPenalty ( )
protected

◆ ~StatisticalShapePointPenalty()

template<class TFixedPointSet, class TMovingPointSet>
virtual itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::~StatisticalShapePointPenalty ( )
protectedvirtual

◆ StatisticalShapePointPenalty() [2/2]

template<class TFixedPointSet, class TMovingPointSet>
itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::StatisticalShapePointPenalty ( const Self &  )
private

Member Function Documentation

◆ BaseVarianceNeedsUpdateOff()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOff ( )
virtual

◆ BaseVarianceNeedsUpdateOn()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOn ( )
virtual

◆ CalculateCutOffDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffDerivative ( typename DerivativeType::element_type &  derivativeElement,
const MeasureType &  value 
) const
private

◆ CalculateCutOffValue()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffValue ( MeasureType &  value) const
private

◆ CalculateDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateDerivative ( DerivativeType &  derivative,
const MeasureType &  value,
const VnlVectorType &  differenceVector,
const VnlVectorType &  centerrotated,
const VnlVectorType &  eigrot,
const unsigned int  shapeLength 
) const
private

◆ CalculateValue()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateValue ( MeasureType &  value,
VnlVectorType &  differenceVector,
VnlVectorType &  centerrotated,
VnlVectorType &  eigrot 
) const
private

◆ FillProposalDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalDerivative ( const OutputPointType &  fixedPoint,
const unsigned int  vertexindex 
) const
private

◆ FillProposalVector()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalVector ( const OutputPointType &  fixedPoint,
const unsigned int  vertexindex 
) const
private

◆ GetBaseVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetBaseVariance ( )
virtual

◆ GetCentroidXVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidXVariance ( )
virtual

◆ GetCentroidYVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidYVariance ( )
virtual

◆ GetCentroidZVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidZVariance ( )
virtual

◆ GetClassName()

template<class TFixedPointSet, class TMovingPointSet>
virtual const char* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

Reimplemented in elastix::StatisticalShapePenalty< TElastix >.

◆ GetCutOffSharpness()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffSharpness ( )
virtual

◆ GetCutOffValue()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffValue ( )
virtual

◆ GetDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetDerivative ( const TransformParametersType &  parameters,
DerivativeType &  Derivative 
) const

Get the derivatives of the match measure.

◆ GetNormalizedShapeModel()

template<class TFixedPointSet, class TMovingPointSet>
virtual const bool& itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetNormalizedShapeModel ( )
virtual

◆ GetShapeModelCalculation()

template<class TFixedPointSet, class TMovingPointSet>
virtual const int& itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShapeModelCalculation ( )
virtual

◆ GetShrinkageIntensity()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShrinkageIntensity ( )
virtual

◆ GetSizeVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetSizeVariance ( )
virtual

◆ GetValue()

template<class TFixedPointSet, class TMovingPointSet>
MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValue ( const TransformParametersType &  parameters) const

Get the value for single valued optimizers.

◆ GetValueAndDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValueAndDerivative ( const TransformParametersType &  parameters,
MeasureType &  Value,
DerivativeType &  Derivative 
) const

Get value and derivatives for multiple valued optimizers.

◆ Initialize()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Initialize ( void  )
throw (ExceptionObject
)
virtual

Initialization.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

◆ New()

template<class TFixedPointSet, class TMovingPointSet>
static Pointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::New ( )
static

Method for creation through the object factory.

◆ NormalizedShapeModelOff()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOff ( )
virtual

◆ NormalizedShapeModelOn()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOn ( )
virtual

◆ NormalizeProposalVector()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizeProposalVector ( const unsigned int  shapeLength) const
private

◆ operator=()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::operator= ( const Self &  )
private

◆ PrintSelf()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protected

PrintSelf.

◆ SetBaseVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVariance ( MeasureType  _arg)
virtual

Set/Get the BaseVariance parameter.

◆ SetBaseVarianceNeedsUpdate()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVarianceNeedsUpdate ( bool  _arg)
virtual

◆ SetCentroidXVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidXVariance ( MeasureType  _arg)
virtual

◆ SetCentroidYVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidYVariance ( MeasureType  _arg)
virtual

◆ SetCentroidZVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidZVariance ( MeasureType  _arg)
virtual

◆ SetCovarianceMatrix()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCovarianceMatrix ( const vnl_matrix< double > *  _arg)
virtual

◆ SetCutOffSharpness()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffSharpness ( MeasureType  _arg)
virtual

◆ SetCutOffValue()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffValue ( MeasureType  _arg)
virtual

◆ SetEigenValues()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenValues ( const vnl_vector< double > *  _arg)
virtual

◆ SetEigenVectors()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenVectors ( const vnl_matrix< double > *  _arg)
virtual

◆ SetMeanVector()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetMeanVector ( const vnl_vector< double > *  _arg)
virtual

◆ SetNormalizedShapeModel()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetNormalizedShapeModel ( bool  _arg)
virtual

◆ SetShapeModelCalculation()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShapeModelCalculation ( int  _arg)
virtual

◆ SetShrinkageIntensity()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensity ( MeasureType  _arg)
virtual

Set/Get the shrinkageIntensity parameter.

◆ SetShrinkageIntensityNeedsUpdate()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensityNeedsUpdate ( bool  _arg)
virtual

◆ SetSizeVariance()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetSizeVariance ( MeasureType  _arg)
virtual

◆ SetVariancesNeedsUpdate()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetVariancesNeedsUpdate ( bool  _arg)
virtual

◆ ShrinkageIntensityNeedsUpdateOff()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOff ( )
virtual

◆ ShrinkageIntensityNeedsUpdateOn()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOn ( )
virtual

◆ UpdateCentroidAndAlignProposalDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalDerivative ( const unsigned int  shapeLength) const
private

◆ UpdateCentroidAndAlignProposalVector()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalVector ( const unsigned int  shapeLength) const
private

◆ UpdateL2()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2 ( const unsigned int  shapeLength) const
private

◆ UpdateL2AndNormalizeProposalDerivative()

template<class TFixedPointSet, class TMovingPointSet>
void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2AndNormalizeProposalDerivative ( const unsigned int  shapeLength) const
private

◆ VariancesNeedsUpdateOff()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOff ( )
virtual

◆ VariancesNeedsUpdateOn()

template<class TFixedPointSet, class TMovingPointSet>
virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOn ( )
virtual

Field Documentation

◆ m_BaseStd

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseStd
private

Definition at line 246 of file itkStatisticalShapePointPenalty.h.

◆ m_BaseVariance

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVariance
private

Definition at line 245 of file itkStatisticalShapePointPenalty.h.

◆ m_BaseVarianceNeedsUpdate

template<class TFixedPointSet, class TMovingPointSet>
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVarianceNeedsUpdate
private

Definition at line 235 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidXStd

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXStd
private

Definition at line 226 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidXVariance

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXVariance
private

Definition at line 225 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidYStd

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYStd
private

Definition at line 228 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidYVariance

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYVariance
private

Definition at line 227 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidZStd

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZStd
private

Definition at line 230 of file itkStatisticalShapePointPenalty.h.

◆ m_CentroidZVariance

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZVariance
private

Definition at line 229 of file itkStatisticalShapePointPenalty.h.

◆ m_CovarianceMatrix

template<class TFixedPointSet, class TMovingPointSet>
const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CovarianceMatrix
private

Definition at line 219 of file itkStatisticalShapePointPenalty.h.

◆ m_CutOffSharpness

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffSharpness
private

Definition at line 251 of file itkStatisticalShapePointPenalty.h.

◆ m_CutOffValue

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffValue
private

Definition at line 250 of file itkStatisticalShapePointPenalty.h.

◆ m_EigenValues

template<class TFixedPointSet, class TMovingPointSet>
const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValues
private

Definition at line 221 of file itkStatisticalShapePointPenalty.h.

◆ m_EigenValuesRegularized

template<class TFixedPointSet, class TMovingPointSet>
VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValuesRegularized
private

Definition at line 238 of file itkStatisticalShapePointPenalty.h.

◆ m_EigenVectors

template<class TFixedPointSet, class TMovingPointSet>
const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenVectors
private

Definition at line 220 of file itkStatisticalShapePointPenalty.h.

◆ m_InverseCovarianceMatrix

template<class TFixedPointSet, class TMovingPointSet>
VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_InverseCovarianceMatrix
private

Definition at line 223 of file itkStatisticalShapePointPenalty.h.

◆ m_MeanValues

template<class TFixedPointSet, class TMovingPointSet>
VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanValues
mutableprivate

Definition at line 248 of file itkStatisticalShapePointPenalty.h.

◆ m_MeanVector

template<class TFixedPointSet, class TMovingPointSet>
const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanVector
private

Definition at line 218 of file itkStatisticalShapePointPenalty.h.

◆ m_NormalizedShapeModel

template<class TFixedPointSet, class TMovingPointSet>
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_NormalizedShapeModel
private

Definition at line 242 of file itkStatisticalShapePointPenalty.h.

◆ m_ProposalDerivative

template<class TFixedPointSet, class TMovingPointSet>
ProposalDerivativeType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalDerivative
mutableprivate

Definition at line 240 of file itkStatisticalShapePointPenalty.h.

◆ m_ProposalLength

template<class TFixedPointSet, class TMovingPointSet>
unsigned int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalLength
private

Definition at line 241 of file itkStatisticalShapePointPenalty.h.

◆ m_ProposalVector

template<class TFixedPointSet, class TMovingPointSet>
VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalVector
mutableprivate

Definition at line 247 of file itkStatisticalShapePointPenalty.h.

◆ m_ShapeModelCalculation

template<class TFixedPointSet, class TMovingPointSet>
int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShapeModelCalculation
private

Definition at line 243 of file itkStatisticalShapePointPenalty.h.

◆ m_ShrinkageIntensity

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensity
private

Definition at line 244 of file itkStatisticalShapePointPenalty.h.

◆ m_ShrinkageIntensityNeedsUpdate

template<class TFixedPointSet, class TMovingPointSet>
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensityNeedsUpdate
private

Definition at line 234 of file itkStatisticalShapePointPenalty.h.

◆ m_SizeStd

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeStd
private

Definition at line 232 of file itkStatisticalShapePointPenalty.h.

◆ m_SizeVariance

template<class TFixedPointSet, class TMovingPointSet>
double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeVariance
private

Definition at line 231 of file itkStatisticalShapePointPenalty.h.

◆ m_VariancesNeedsUpdate

template<class TFixedPointSet, class TMovingPointSet>
bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_VariancesNeedsUpdate
private

Definition at line 236 of file itkStatisticalShapePointPenalty.h.


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