#include <elxTransformixMain.h>

Detailed Description

A class with all functionality to configure transformix.

The TransformixMain class inherits from ElastixMain. We overwrite the Run() -function. In the new Run() the Run()-function from the ElastixTemplate-class is not called (as in elxElastixMain.cxx), because this time we don't want to start a registration, but just apply a transformation to an input image.

Definition at line 38 of file elxTransformixMain.h.

Inheritance diagram for elastix::TransformixMain:

Public Types
typedef Superclass::ArgumentMapType	ArgumentMapType

typedef Superclass::ComponentDatabasePointer	ComponentDatabasePointer

typedef Superclass::ComponentDatabaseType	ComponentDatabaseType

typedef Superclass::ComponentDescriptionType	ComponentDescriptionType

typedef Superclass::ComponentLoaderPointer	ComponentLoaderPointer

typedef Superclass::ComponentLoaderType	ComponentLoaderType

typedef Superclass::ConfigurationPointer	ConfigurationPointer

typedef Superclass::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectContainerPointer	DataObjectContainerPointer

typedef Superclass::DataObjectContainerType	DataObjectContainerType

typedef Superclass::DataObjectPointer	DataObjectPointer

typedef Superclass::DataObjectType	DataObjectType

typedef Superclass::DBIndexType	DBIndexType

typedef Superclass::ElastixBaseType	ElastixBaseType

typedef Superclass::ImageDimensionType	ImageDimensionType

typedef Superclass::ObjectContainerPointer	ObjectContainerPointer

typedef Superclass::ObjectContainerType	ObjectContainerType

typedef Superclass::ObjectPointer	ObjectPointer

typedef Superclass::ObjectType	ObjectType

typedef Superclass::ParameterMapType	ParameterMapType

typedef Superclass::PixelTypeDescriptionType	PixelTypeDescriptionType

typedef itk::SmartPointer< Self >	Pointer

typedef Superclass::PtrToCreator	PtrToCreator

typedef TransformixMain	Self

typedef ElastixMain	Superclass

Public Types inherited from elastix::ElastixMain
typedef ConfigurationType::CommandLineArgumentMapType	ArgumentMapType

typedef ComponentDatabaseType::Pointer	ComponentDatabasePointer

typedef ComponentDatabase	ComponentDatabaseType

typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType

typedef ComponentLoaderType::Pointer	ComponentLoaderPointer

typedef ComponentLoader	ComponentLoaderType

typedef ConfigurationType::Pointer	ConfigurationPointer

typedef ElastixBase::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef ElastixBase::DataObjectContainerPointer	DataObjectContainerPointer

typedef ElastixBase::DataObjectContainerType	DataObjectContainerType

typedef DataObjectType::Pointer	DataObjectPointer

typedef itk::DataObject	DataObjectType

typedef ComponentDatabaseType::IndexType	DBIndexType

typedef ElastixBase	ElastixBaseType

typedef ElastixBase::FlatDirectionCosinesType	FlatDirectionCosinesType

typedef ComponentDatabaseType::ImageDimensionType	ImageDimensionType

typedef ElastixBase::ObjectContainerPointer	ObjectContainerPointer

typedef ElastixBase::ObjectContainerType	ObjectContainerType

typedef ObjectType::Pointer	ObjectPointer

typedef itk::Object	ObjectType

typedef itk::ParameterMapInterface::ParameterMapType	ParameterMapType

typedef ComponentDatabaseType::PixelTypeDescriptionType	PixelTypeDescriptionType

typedef itk::SmartPointer< Self >	Pointer

typedef ComponentDatabaseType::PtrToCreator	PtrToCreator

typedef ElastixMain	Self

typedef itk::Object	Superclass

Public Member Functions
virtual const char *	GetClassName () const

virtual int	Run (void) ITK_OVERRIDE

virtual int	Run (ArgumentMapType &argmap) ITK_OVERRIDE

virtual int	Run (ArgumentMapType &argmap, ParameterMapType &inputMap) ITK_OVERRIDE

virtual int	Run (ArgumentMapType &argmap, std::vector< ParameterMapType > &inputMaps)

virtual void	SetInputImageContainer (DataObjectContainerType *inputImageContainer)

Public Member Functions inherited from elastix::ElastixMain
virtual void	EnterCommandLineArguments (ArgumentMapType &argmap)

virtual void	EnterCommandLineArguments (ArgumentMapType &argmap, ParameterMapType &inputMap)

virtual void	EnterCommandLineArguments (ArgumentMapType &argmap, std::vector< ParameterMapType > &inputMaps)

virtual ConfigurationType *	GetConfiguration ()

virtual DBIndexType	GetDBIndex () const

virtual ObjectType *	GetElastix ()

virtual ElastixBaseType *	GetElastixBase (void) const

unsigned int	GetElastixLevel (void)

virtual ObjectType *	GetFinalTransform ()

virtual DataObjectContainerType *	GetFixedImageContainer ()

virtual ImageDimensionType	GetFixedImageDimension ()

virtual PixelTypeDescriptionType	GetFixedImagePixelType ()

virtual DataObjectContainerType *	GetFixedMaskContainer ()

virtual ObjectType *	GetInitialTransform ()

virtual DataObjectContainerType *	GetMovingImageContainer ()

virtual ImageDimensionType	GetMovingImageDimension ()

virtual PixelTypeDescriptionType	GetMovingImagePixelType ()

virtual DataObjectContainerType *	GetMovingMaskContainer ()

virtual const FlatDirectionCosinesType &	GetOriginalFixedImageDirectionFlat (void) const

virtual DataObjectContainerType *	GetResultDeformationFieldContainer ()

virtual DataObjectContainerType *	GetResultImageContainer ()

unsigned int	GetTotalNumberOfElastixLevels (void)

virtual ParameterMapType	GetTransformParametersMap (void) const

virtual void	SetConfiguration (ConfigurationType *_arg)

void	SetElastixLevel (unsigned int level)

virtual void	SetFixedImageContainer (DataObjectContainerType *_arg)

virtual void	SetFixedImageDimension (ImageDimensionType _arg)

virtual void	SetFixedImagePixelType (PixelTypeDescriptionType _arg)

virtual void	SetFixedMaskContainer (DataObjectContainerType *_arg)

virtual void	SetInitialTransform (ObjectType *_arg)

virtual void	SetMaximumNumberOfThreads (void) const

virtual void	SetMovingImageContainer (DataObjectContainerType *_arg)

virtual void	SetMovingImageDimension (ImageDimensionType _arg)

virtual void	SetMovingImagePixelType (PixelTypeDescriptionType _arg)

virtual void	SetMovingMaskContainer (DataObjectContainerType *_arg)

virtual void	SetOriginalFixedImageDirectionFlat (const FlatDirectionCosinesType &arg)

virtual void	SetProcessPriority (void) const

virtual void	SetResultDeformationFieldContainer (DataObjectContainerType *_arg)

virtual void	SetResultImageContainer (DataObjectContainerType *_arg)

void	SetTotalNumberOfElastixLevels (unsigned int levels)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from elastix::ElastixMain
static ComponentDatabase *	GetComponentDatabase (void)

static Pointer	New ()

static void	SetComponentDatabase (ComponentDatabase *arg)

static void	UnloadComponents (void)

Protected Member Functions
virtual int	InitDBIndex (void) ITK_OVERRIDE

	TransformixMain ()

virtual	~TransformixMain ()

Protected Member Functions inherited from elastix::ElastixMain
virtual ObjectPointer	CreateComponent (const ComponentDescriptionType &name)

virtual ObjectContainerPointer	CreateComponents (const ComponentDescriptionType &key, const ComponentDescriptionType &defaultComponentName, int &errorcode, bool mandatoryComponent=true)

	ElastixMain ()

void	GetImageInformationFromFile (const std::string &filename, ImageDimensionType &imageDimension) const

virtual int	LoadComponents (void)

virtual	~ElastixMain ()

Private Member Functions
void	operator= (const Self &)

	TransformixMain (const Self &)

Additional Inherited Members
Protected Attributes inherited from elastix::ElastixMain
ConfigurationPointer	m_Configuration

std::vector< ConfigurationPointer >	m_Configurations

DBIndexType	m_DBIndex

ObjectPointer	m_Elastix

ObjectPointer	m_FinalTransform

DataObjectContainerPointer	m_FixedImageContainer

ImageDimensionType	m_FixedImageDimension

PixelTypeDescriptionType	m_FixedImagePixelType

DataObjectContainerPointer	m_FixedMaskContainer

ObjectPointer	m_InitialTransform

DataObjectContainerPointer	m_MovingImageContainer

ImageDimensionType	m_MovingImageDimension

PixelTypeDescriptionType	m_MovingImagePixelType

DataObjectContainerPointer	m_MovingMaskContainer

FlatDirectionCosinesType	m_OriginalFixedImageDirection

DataObjectContainerPointer	m_ResultDeformationFieldContainer

DataObjectContainerPointer	m_ResultImageContainer

ParameterMapType	m_TransformParametersMap

Static Protected Attributes inherited from elastix::ElastixMain
static ComponentDatabasePointer	s_CDB

static ComponentLoaderPointer	s_ComponentLoader