elastix::TransformixFilter< TMovingImage > Class Template Reference

#include <elxTransformixFilter.h>

Detailed Description

template<typename TMovingImage>
class elastix::TransformixFilter< TMovingImage >

Definition at line 36 of file elxTransformixFilter.h.

Inheritance diagram for elastix::TransformixFilter< TMovingImage >:

Public Types
typedef ArgumentMapType::value_type	ArgumentMapEntryType
typedef TransformixMainType::ArgumentMapType	ArgumentMapType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef TransformixMainType::DataObjectContainerPointer	DataObjectContainerPointer
typedef TransformixMainType::DataObjectContainerType	DataObjectContainerType
typedef itk::ProcessObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef itk::ProcessObject::DataObjectPointer	DataObjectPointer
typedef TMovingImage::ConstPointer	InputImageConstPointer
typedef TMovingImage::Pointer	InputImagePointer
typedef itk::Image< itk::Vector< float, TMovingImage::ImageDimension >, TMovingImage::ImageDimension >	OutputDeformationFieldType
typedef ParameterObjectType::ParameterMapType	ParameterMapType
typedef ParameterObjectType::ParameterMapVectorType	ParameterMapVectorType
typedef ParameterObjectType::ConstPointer	ParameterObjectConstPointer
typedef ParameterObjectType::Pointer	ParameterObjectPointer
typedef ParameterObject	ParameterObjectType
typedef ParameterObjectType::ParameterValueVectorType	ParameterValueVectorType
typedef itk::SmartPointer< Self >	Pointer
typedef TransformixFilter	Self
typedef itk::ImageSource< TMovingImage >	Superclass
typedef TransformixMainType::Pointer	TransformixMainPointer
typedef elastix::TransformixMain	TransformixMainType

Public Member Functions
virtual void	ComputeDeformationFieldOff ()
virtual void	ComputeDeformationFieldOn ()
virtual void	ComputeDeterminantOfSpatialJacobianOff ()
virtual void	ComputeDeterminantOfSpatialJacobianOn ()
virtual void	ComputeSpatialJacobianOff ()
virtual void	ComputeSpatialJacobianOn ()
virtual const char *	GetClassName () const
virtual bool	GetComputeDeformationField () const
virtual bool	GetComputeDeterminantOfSpatialJacobian () const
virtual bool	GetComputeSpatialJacobian () const
virtual std::string	GetFixedPointSetFileName ()
virtual std::string	GetLogFileName () const
virtual bool	GetLogToConsole () const
virtual bool	GetLogToFile () const
InputImageConstPointer	GetMovingImage (void)
OutputDeformationFieldType *	GetOutputDeformationField (void)
const OutputDeformationFieldType *	GetOutputDeformationField (void) const
virtual std::string	GetOutputDirectory () const
ParameterObjectType *	GetTransformParameterObject (void)
const ParameterObjectType *	GetTransformParameterObject (void) const
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void	LogToConsoleOff ()
virtual void	LogToConsoleOn ()
virtual void	LogToFileOff ()
virtual void	LogToFileOn ()
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &key) ITK_OVERRIDE
virtual void	RemoveFixedPointSetFileName ()
virtual void	RemoveLogFileName (void)
virtual void	RemoveMovingImage (void)
virtual void	RemoveOutputDirectory ()
virtual void	SetComputeDeformationField (bool _arg)
virtual void	SetComputeDeterminantOfSpatialJacobian (bool _arg)
virtual void	SetComputeSpatialJacobian (bool _arg)
virtual void	SetFixedPointSetFileName (std::string _arg)
virtual void	SetLogFileName (std::string logFileName)
virtual void	SetLogToConsole (bool _arg)
virtual void	SetLogToFile (bool _arg)
virtual void	SetMovingImage (TMovingImage *inputImage)
virtual void	SetOutputDirectory (std::string _arg)
virtual void	SetTransformParameterObject (ParameterObjectPointer transformParameterObject)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
virtual void	GenerateData (void) ITK_OVERRIDE
	TransformixFilter (void)

Private Member Functions
virtual bool	IsEmpty (const InputImagePointer inputImage)
void	operator= (const Self &)
	TransformixFilter (const Self &)
virtual void	VerifyInputInformation (void) ITK_OVERRIDE

Private Attributes
bool	m_ComputeDeformationField
bool	m_ComputeDeterminantOfSpatialJacobian
bool	m_ComputeSpatialJacobian
std::string	m_FixedPointSetFileName
std::string	m_LogFileName
bool	m_LogToConsole
bool	m_LogToFile
std::string	m_OutputDirectory

Member Typedef Documentation

ArgumentMapEntryType

template<typename TMovingImage >

typedef ArgumentMapType::value_type elastix::TransformixFilter< TMovingImage >::ArgumentMapEntryType

Definition at line 56 of file elxTransformixFilter.h.

ArgumentMapType

template<typename TMovingImage >

typedef TransformixMainType::ArgumentMapType elastix::TransformixFilter< TMovingImage >::ArgumentMapType

Definition at line 55 of file elxTransformixFilter.h.

ConstPointer

template<typename TMovingImage >

typedef itk::SmartPointer< const Self > elastix::TransformixFilter< TMovingImage >::ConstPointer

Definition at line 44 of file elxTransformixFilter.h.

DataObjectContainerPointer

template<typename TMovingImage >

typedef TransformixMainType::DataObjectContainerPointer elastix::TransformixFilter< TMovingImage >::DataObjectContainerPointer

Definition at line 61 of file elxTransformixFilter.h.

DataObjectContainerType

template<typename TMovingImage >

typedef TransformixMainType::DataObjectContainerType elastix::TransformixFilter< TMovingImage >::DataObjectContainerType

Definition at line 60 of file elxTransformixFilter.h.

DataObjectIdentifierType

template<typename TMovingImage >

typedef itk::ProcessObject::DataObjectIdentifierType elastix::TransformixFilter< TMovingImage >::DataObjectIdentifierType

Definition at line 59 of file elxTransformixFilter.h.

DataObjectPointer

template<typename TMovingImage >

typedef itk::ProcessObject::DataObjectPointer elastix::TransformixFilter< TMovingImage >::DataObjectPointer

Definition at line 58 of file elxTransformixFilter.h.

InputImageConstPointer

template<typename TMovingImage >

typedef TMovingImage::ConstPointer elastix::TransformixFilter< TMovingImage >::InputImageConstPointer

Definition at line 74 of file elxTransformixFilter.h.

InputImagePointer

template<typename TMovingImage >

typedef TMovingImage::Pointer elastix::TransformixFilter< TMovingImage >::InputImagePointer

Definition at line 73 of file elxTransformixFilter.h.

OutputDeformationFieldType

template<typename TMovingImage >

typedef itk::Image< itk::Vector< float, TMovingImage::ImageDimension >, TMovingImage::ImageDimension > elastix::TransformixFilter< TMovingImage >::OutputDeformationFieldType

Definition at line 71 of file elxTransformixFilter.h.

ParameterMapType

template<typename TMovingImage >

typedef ParameterObjectType::ParameterMapType elastix::TransformixFilter< TMovingImage >::ParameterMapType

Definition at line 65 of file elxTransformixFilter.h.

ParameterMapVectorType

template<typename TMovingImage >

typedef ParameterObjectType::ParameterMapVectorType elastix::TransformixFilter< TMovingImage >::ParameterMapVectorType

Definition at line 64 of file elxTransformixFilter.h.

ParameterObjectConstPointer

template<typename TMovingImage >

typedef ParameterObjectType::ConstPointer elastix::TransformixFilter< TMovingImage >::ParameterObjectConstPointer

Definition at line 68 of file elxTransformixFilter.h.

ParameterObjectPointer

template<typename TMovingImage >

typedef ParameterObjectType::Pointer elastix::TransformixFilter< TMovingImage >::ParameterObjectPointer

Definition at line 67 of file elxTransformixFilter.h.

ParameterObjectType

template<typename TMovingImage >

typedef ParameterObject elastix::TransformixFilter< TMovingImage >::ParameterObjectType

Definition at line 63 of file elxTransformixFilter.h.

ParameterValueVectorType

template<typename TMovingImage >

typedef ParameterObjectType::ParameterValueVectorType elastix::TransformixFilter< TMovingImage >::ParameterValueVectorType

Definition at line 66 of file elxTransformixFilter.h.

Pointer

template<typename TMovingImage >

typedef itk::SmartPointer< Self > elastix::TransformixFilter< TMovingImage >::Pointer

Definition at line 43 of file elxTransformixFilter.h.

Self

template<typename TMovingImage >

typedef TransformixFilter elastix::TransformixFilter< TMovingImage >::Self

Standard ITK typedefs.

Definition at line 41 of file elxTransformixFilter.h.

Superclass

template<typename TMovingImage >

typedef itk::ImageSource< TMovingImage > elastix::TransformixFilter< TMovingImage >::Superclass

Definition at line 42 of file elxTransformixFilter.h.

TransformixMainPointer

template<typename TMovingImage >

typedef TransformixMainType::Pointer elastix::TransformixFilter< TMovingImage >::TransformixMainPointer

Definition at line 54 of file elxTransformixFilter.h.

TransformixMainType

template<typename TMovingImage >

typedef elastix::TransformixMain elastix::TransformixFilter< TMovingImage >::TransformixMainType

Typedefs.

Definition at line 50 of file elxTransformixFilter.h.

Constructor & Destructor Documentation

TransformixFilter() [1/2]

template<typename TMovingImage >

elastix::TransformixFilter< TMovingImage >::TransformixFilter ( void  )

protected

TransformixFilter() [2/2]

template<typename TMovingImage >

elastix::TransformixFilter< TMovingImage >::TransformixFilter ( const Self &  )

private

Member Function Documentation

ComputeDeformationFieldOff()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::ComputeDeformationFieldOff ( )

virtual

ComputeDeformationFieldOn()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::ComputeDeformationFieldOn ( )

virtual

ComputeDeterminantOfSpatialJacobianOff()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::ComputeDeterminantOfSpatialJacobianOff ( )

virtual

ComputeDeterminantOfSpatialJacobianOn()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::ComputeDeterminantOfSpatialJacobianOn ( )

virtual

ComputeSpatialJacobianOff()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::ComputeSpatialJacobianOff ( )

virtual

ComputeSpatialJacobianOn()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::ComputeSpatialJacobianOn ( )

virtual

GenerateData()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::GenerateData ( void  )

protectedvirtual

GetClassName()

template<typename TMovingImage >

virtual const char* elastix::TransformixFilter< TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

GetComputeDeformationField()

template<typename TMovingImage >

virtual bool elastix::TransformixFilter< TMovingImage >::GetComputeDeformationField ( ) const

virtual

GetComputeDeterminantOfSpatialJacobian()

template<typename TMovingImage >

virtual bool elastix::TransformixFilter< TMovingImage >::GetComputeDeterminantOfSpatialJacobian ( ) const

virtual

GetComputeSpatialJacobian()

template<typename TMovingImage >

virtual bool elastix::TransformixFilter< TMovingImage >::GetComputeSpatialJacobian ( ) const

virtual

GetFixedPointSetFileName()

template<typename TMovingImage >

virtual std::string elastix::TransformixFilter< TMovingImage >::GetFixedPointSetFileName ( )

virtual

GetLogFileName()

template<typename TMovingImage >

virtual std::string elastix::TransformixFilter< TMovingImage >::GetLogFileName ( ) const

virtual

GetLogToConsole()

template<typename TMovingImage >

virtual bool elastix::TransformixFilter< TMovingImage >::GetLogToConsole ( ) const

virtual

GetLogToFile()

template<typename TMovingImage >

virtual bool elastix::TransformixFilter< TMovingImage >::GetLogToFile ( ) const

virtual

GetMovingImage()

template<typename TMovingImage >

InputImageConstPointer elastix::TransformixFilter< TMovingImage >::GetMovingImage

(

void

)

GetOutputDeformationField() [1/2]

template<typename TMovingImage >

OutputDeformationFieldType* elastix::TransformixFilter< TMovingImage >::GetOutputDeformationField

(

void

)

GetOutputDeformationField() [2/2]

template<typename TMovingImage >

const OutputDeformationFieldType* elastix::TransformixFilter< TMovingImage >::GetOutputDeformationField

(

void

)

const

GetOutputDirectory()

template<typename TMovingImage >

virtual std::string elastix::TransformixFilter< TMovingImage >::GetOutputDirectory ( ) const

virtual

GetTransformParameterObject() [1/2]

template<typename TMovingImage >

ParameterObjectType* elastix::TransformixFilter< TMovingImage >::GetTransformParameterObject

(

void

)

GetTransformParameterObject() [2/2]

template<typename TMovingImage >

const ParameterObjectType* elastix::TransformixFilter< TMovingImage >::GetTransformParameterObject

(

void

)

const

IsEmpty()

template<typename TMovingImage >

virtual bool elastix::TransformixFilter< TMovingImage >::IsEmpty ( const InputImagePointer  inputImage )

privatevirtual

IsEmpty.

itkStaticConstMacro()

template<typename TMovingImage >

elastix::TransformixFilter< TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned	int,
		TMovingImage::ImageDimension
	)

LogToConsoleOff()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::LogToConsoleOff ( )

virtual

LogToConsoleOn()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::LogToConsoleOn ( )

virtual

LogToFileOff()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::LogToFileOff ( )

virtual

LogToFileOn()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::LogToFileOn ( )

virtual

MakeOutput()

template<typename TMovingImage >

virtual DataObjectPointer elastix::TransformixFilter< TMovingImage >::MakeOutput ( const DataObjectIdentifierType &  key )

virtual

To support outputs of different types (i.e. ResultImage and ResultDeformationField) MakeOutput from itk::ImageSource< TOutputImage > needs to be overridden

New()

template<typename TMovingImage >

static Pointer elastix::TransformixFilter< TMovingImage >::New ( )

static

Method for creation through the object factory.

operator=()

template<typename TMovingImage >

void elastix::TransformixFilter< TMovingImage >::operator= ( const Self &  )

private

RemoveFixedPointSetFileName()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::RemoveFixedPointSetFileName ( )

inlinevirtual

Definition at line 86 of file elxTransformixFilter.h.

RemoveLogFileName()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::RemoveLogFileName ( void  )

virtual

RemoveMovingImage()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::RemoveMovingImage ( void  )

virtual

RemoveOutputDirectory()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::RemoveOutputDirectory ( )

inlinevirtual

Definition at line 117 of file elxTransformixFilter.h.

SetComputeDeformationField()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetComputeDeformationField ( bool  _arg )

virtual

Compute deformation field On/Off.

SetComputeDeterminantOfSpatialJacobian()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetComputeDeterminantOfSpatialJacobian ( bool  _arg )

virtual

Compute determinant of spatial Jacobian On/Off.

SetComputeSpatialJacobian()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetComputeSpatialJacobian ( bool  _arg )

virtual

Compute spatial Jacobian On/Off.

SetFixedPointSetFileName()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetFixedPointSetFileName ( std::string  _arg )

virtual

Set/Get/Remove moving point set filename.

SetLogFileName()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetLogFileName ( std::string  logFileName )

virtual

Set/Get/Remove log filename.

SetLogToConsole()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetLogToConsole ( bool  _arg )

virtual

Log to std::cout on/off.

SetLogToFile()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetLogToFile ( bool  _arg )

virtual

Log to file on/off.

SetMovingImage()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetMovingImage ( TMovingImage *  inputImage )

virtual

Set/Get/Add moving image.

SetOutputDirectory()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetOutputDirectory ( std::string  _arg )

virtual

Set/Get/Remove output directory.

SetTransformParameterObject()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::SetTransformParameterObject ( ParameterObjectPointer  transformParameterObject )

virtual

Get/Set transform parameter object.

VerifyInputInformation()

template<typename TMovingImage >

virtual void elastix::TransformixFilter< TMovingImage >::VerifyInputInformation ( void  )

inlineprivatevirtual

Let transformix handle input verification internally

Definition at line 153 of file elxTransformixFilter.h.

Field Documentation

m_ComputeDeformationField

template<typename TMovingImage >

bool elastix::TransformixFilter< TMovingImage >::m_ComputeDeformationField

private

Definition at line 164 of file elxTransformixFilter.h.

m_ComputeDeterminantOfSpatialJacobian

template<typename TMovingImage >

bool elastix::TransformixFilter< TMovingImage >::m_ComputeDeterminantOfSpatialJacobian

private

Definition at line 163 of file elxTransformixFilter.h.

m_ComputeSpatialJacobian

template<typename TMovingImage >

bool elastix::TransformixFilter< TMovingImage >::m_ComputeSpatialJacobian

private

Definition at line 162 of file elxTransformixFilter.h.

m_FixedPointSetFileName

template<typename TMovingImage >

std::string elastix::TransformixFilter< TMovingImage >::m_FixedPointSetFileName

private

Definition at line 161 of file elxTransformixFilter.h.

m_LogFileName

template<typename TMovingImage >

std::string elastix::TransformixFilter< TMovingImage >::m_LogFileName

private

Definition at line 167 of file elxTransformixFilter.h.

m_LogToConsole

template<typename TMovingImage >

bool elastix::TransformixFilter< TMovingImage >::m_LogToConsole

private

Definition at line 169 of file elxTransformixFilter.h.

m_LogToFile

template<typename TMovingImage >

bool elastix::TransformixFilter< TMovingImage >::m_LogToFile

private

Definition at line 170 of file elxTransformixFilter.h.

m_OutputDirectory

template<typename TMovingImage >

std::string elastix::TransformixFilter< TMovingImage >::m_OutputDirectory

private

Definition at line 166 of file elxTransformixFilter.h.