elastix::PolydataDummyPenalty< TElastix > Class Template Reference

#include <elxPolydataDummyPenalty.h>

Detailed Description

template<class TElastix>
class elastix::PolydataDummyPenalty< TElastix >

A dummy metric to generate transformed meshes at each iteration. This metric does not contribute to the cost function, but provides the options to read vtk polydata meshes from the command-line and write the transformed meshes to disk each iteration or resolution level. The command-line options for input meshes is: -fmesh<[A-Z]><MetricNumber>. This metric can be used as a base for other mesh-based penalties.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "PolydataDummyPenalty")

(WriteResultMeshAfterEachIteration "True")

(WriteResultMeshAfterEachResolution "True")

Definition at line 63 of file elxPolydataDummyPenalty.h.

Inheritance diagram for elastix::PolydataDummyPenalty< TElastix >:

Public Types
typedef Superclass1::CellInterfaceType	CellInterfaceType
typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass1::CoordinateRepresentationType	CoordinateRepresentationType
typedef OutputPointType::CoordRepType	CoordRepType
typedef Superclass1::DerivativeType	DerivativeType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass1::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass1::FixedImageMaskType	FixedImageMaskType
typedef Superclass2::FixedImageType	FixedImageType
typedef Superclass1::FixedMeshConstPointer	FixedMeshConstPointer
typedef Superclass1::FixedMeshContainerPointer	FixedMeshContainerPointer
typedef Superclass1::FixedMeshContainerType	FixedMeshContainerType
typedef Superclass1::FixedMeshPointer	FixedMeshPointer
typedef Superclass1::FixedMeshType	FixedMeshType
typedef Superclass1::FixedPointSetConstPointer	FixedPointSetConstPointer
typedef Superclass1::FixedPointSetType	FixedPointSetType
typedef FixedImageType	ImageType
typedef CombinationTransformType::InitialTransformType	InitialTransformType
typedef Superclass1::InputPointType	InputPointType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::MappedMeshContainerPointer	MappedMeshContainerPointer
typedef Superclass1::MappedMeshContainerType	MappedMeshContainerType
typedef Superclass1::MeasureType	MeasureType
typedef Superclass1::MeshIdType	MeshIdType
typedef FixedMeshType	MeshType
typedef Superclass1::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass1::MovingImageMaskType	MovingImageMaskType
typedef Superclass2::MovingImageType	MovingImageType
typedef Superclass1::MovingPointSetConstPointer	MovingPointSetConstPointer
typedef Superclass1::MovingPointSetType	MovingPointSetType
typedef itk::Object	ObjectType
typedef Superclass1::OutputPointType	OutputPointType
typedef Superclass1::ParametersType	ParametersType
typedef itk::SmartPointer< Self >	Pointer
typedef FixedPointSetType	PointSetType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef PolydataDummyPenalty	Self
typedef itk::MeshPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType >	Superclass1
typedef MetricBase< TElastix >	Superclass2
typedef Superclass1::TransformJacobianType	TransformJacobianType
typedef Superclass1::TransformParametersType	TransformParametersType
typedef Superclass1::TransformPointer	TransformPointer
typedef Superclass1::TransformType	TransformType
Public Types inherited from itk::MeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef MeshTraitsType::CellType::CellInterface	CellInterfaceType
typedef SmartPointer< const Self >	ConstPointer
typedef InputPointType::CoordRepType	CoordRepType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::DerivativeValueType	DerivativeValueType
typedef unsigned char	DummyMeshPixelType
typedef TransformType::InputPointType	FixedImagePointType
typedef FixedMeshType::ConstPointer	FixedMeshConstPointer
typedef FixedMeshContainerType::ConstPointer	FixedMeshContainerConstPointer
typedef FixedMeshContainerType::ElementIdentifier	FixedMeshContainerElementIdentifier
typedef FixedMeshContainerType::Pointer	FixedMeshContainerPointer
typedef VectorContainer< MeshIdType, FixedMeshConstPointer >	FixedMeshContainerType
typedef FixedMeshType::Pointer	FixedMeshPointer
typedef Mesh< PointNormalType, FixedPointSetDimension, MeshTraitsType >	FixedMeshType
typedef Superclass::InputPointType	InputPointType
typedef MappedMeshContainerType::ConstPointer	MappedMeshContainerConstPointer
typedef MappedMeshContainerType::Pointer	MappedMeshContainerPointer
typedef VectorContainer< MeshIdType, FixedMeshPointer >	MappedMeshContainerType
typedef Superclass::MeasureType	MeasureType
typedef unsigned int	MeshIdType
typedef FixedMeshType::PointDataContainerIterator	MeshPointDataContainerConstIteratorType
typedef FixedMeshType::PointDataContainerConstPointer	MeshPointDataContainerConstPointer
typedef MeshPointDataContainerType::Iterator	MeshPointDataContainerIteratorType
typedef FixedMeshType::PointDataContainerPointer	MeshPointDataContainerPointer
typedef FixedMeshType::PointDataContainer	MeshPointDataContainerType
typedef FixedMeshType::PointsContainerConstIterator	MeshPointsContainerConstIteratorType
typedef MeshPointsContainerType::ConstPointer	MeshPointsContainerConstPointer
typedef FixedMeshType::PointsContainerIterator	MeshPointsContainerIteratorType
typedef MeshPointsContainerType::Pointer	MeshPointsContainerPointer
typedef FixedMeshType::PointsContainer	MeshPointsContainerType
typedef Array< DerivativeValueType >	MeshPointsDerivativeValueType
typedef FixedMeshType::PointType	MeshPointType
typedef DefaultStaticMeshTraits< PointNormalType, FixedPointSetDimension, FixedPointSetDimension, CoordRepType >	MeshTraitsType
typedef TransformType::OutputPointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef Superclass::OutputPointType	OutputPointType
typedef SmartPointer< Self >	Pointer
typedef Vector< typename TransformType::ScalarType, FixedPointSetDimension >	PointNormalType
typedef MeshPenalty	Self
typedef TransformType::SpatialJacobianType	SpatialJacobianType
typedef SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
typedef FixedMeshType::PointType::VectorType	VectorType
typedef vnl_vector< CoordRepType >	VnlVectorType
Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) >	FixedImageMaskType
typedef FixedPointSetType::ConstPointer	FixedPointSetConstPointer
typedef FixedPointSetType::PixelType	FixedPointSetPixelType
typedef MetricBase< TElastix >::FixedPointSetType	FixedPointSetType
typedef TransformType::InputPointType	InputPointType
typedef Superclass::MeasureType	MeasureType
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) >	MovingImageMaskType
typedef MovingPointSetType::ConstPointer	MovingPointSetConstPointer
typedef MovingPointSetType::PixelType	MovingPointSetPixelType
typedef MetricBase< TElastix >::MovingPointSetType	MovingPointSetType
typedef TransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef TransformType::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef FixedPointSetType::PointDataContainer::ConstIterator	PointDataIterator
typedef SmartPointer< Self >	Pointer
typedef FixedPointSetType::PointsContainer::ConstIterator	PointIterator
typedef SingleValuedPointSetToPointSetMetric	Self
typedef SingleValuedCostFunction	Superclass
typedef TransformType::JacobianType	TransformJacobianType
typedef TransformType::ParametersType	TransformParametersType
typedef TransformType::Pointer	TransformPointer
typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) >	TransformType
Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >	AdvancedMetricType
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ITKBaseType::ParametersValueType	CoordinateRepresentationType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ElastixType::FixedImageType	FixedImageType
typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	FixedPointSetType
typedef FixedImageType::PointType	FixedPointType
typedef FixedPointType::ValueType	FixedPointValueType
typedef AdvancedMetricType::ImageSamplerType	ImageSamplerBaseType
typedef itk::SingleValuedCostFunction	ITKBaseType
typedef ITKBaseType::MeasureType	MeasureType
typedef AdvancedMetricType::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef ElastixType::MovingImageType	MovingImageType
typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	MovingPointSetType
typedef MovingImageType::PointType	MovingPointType
typedef MovingPointType::ValueType	MovingPointValueType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef MetricBase	Self
typedef BaseComponentSE< TElastix >	Superclass
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer	ConfigurationPointer
typedef ElastixType::ConfigurationType	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
virtual void	AfterEachIteration (void)
virtual void	AfterEachResolution (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeRegistration (void)
	elxClassNameMacro ("PolydataDummyPenalty")
virtual const char *	GetClassName () const
virtual void	Initialize (void) throw ( itk::ExceptionObject )
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
unsigned int	ReadMesh (const std::string &meshFileName, typename FixedMeshType::Pointer &mesh)
unsigned int	ReadTransformixPoints (const std::string &filename, typename MeshType::Pointer &mesh)
virtual void	SelectNewSamples (void)
void	WriteResultMesh (const char *filename, MeshIdType meshId)
Public Member Functions inherited from itk::MeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
virtual const FixedMeshContainerType *	GetFixedMeshContainer ()
virtual MappedMeshContainerType *	GetMappedMeshContainer ()
MeasureType	GetValue (const TransformParametersType &parameters) const
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
	itkStaticConstMacro (FixedPointSetDimension, unsigned int, Superclass::FixedPointSetDimension)
virtual void	SetFixedMeshContainer (const FixedMeshContainerType *_arg)
virtual void	SetMappedMeshContainer (MappedMeshContainerType *_arg)
Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const FixedImageMaskType *	GetFixedImageMask ()
virtual const FixedPointSetType *	GetFixedPointSet ()
virtual const MovingImageMaskType *	GetMovingImageMask ()
virtual const MovingPointSetType *	GetMovingPointSet ()
unsigned int	GetNumberOfParameters (void) const
virtual const TransformType *	GetTransform ()
virtual const bool &	GetUseMetricSingleThreaded ()
	itkStaticConstMacro (FixedPointSetDimension, unsigned int, MetricBase< TElastix >::FixedPointSetType ::PointDimension)
	itkStaticConstMacro (MovingPointSetDimension, unsigned int, MetricBase< TElastix >::MovingPointSetType ::PointDimension)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedPointSet (const FixedPointSetType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetMovingPointSet (const MovingPointSetType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void	AfterEachIterationBase (void)
virtual void	BeforeEachResolutionBase (void)
virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler (void) const
virtual bool	GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual MeasureType	GetCurrentExactMetricValue (void) const
virtual bool	GetShowExactMetricValue (void) const
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationType *	GetConfiguration (void) const
virtual ElastixType *	GetElastix (void) const
virtual RegistrationPointer	GetRegistration (void) const
virtual void	SetConfiguration (ConfigurationType *_arg)
virtual void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeRegistrationBase (void)
std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const
virtual const char *	elxGetClassName (void) const
virtual const char *	GetComponentLabel (void) const
	itkTypeMacroNoParent (BaseComponent)
virtual void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::MeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
static Pointer	New ()

Protected Member Functions
	PolydataDummyPenalty ()
virtual	~PolydataDummyPenalty ()
Protected Member Functions inherited from itk::MeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
	MeshPenalty ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual	~MeshPenalty ()
Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void	PrintSelf (std::ostream &os, Indent indent) const
	SingleValuedPointSetToPointSetMetric ()
virtual	~SingleValuedPointSetToPointSetMetric ()
Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)
	MetricBase ()
virtual	~MetricBase ()
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()
virtual	~BaseComponentSE ()
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()
virtual	~BaseComponent ()

Private Member Functions
void	operator= (const Self &)
	PolydataDummyPenalty (const Self &)

Private Attributes
unsigned int	m_NumberOfMeshes

Additional Inherited Members
Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer	ExactMetricImageSamplerPointer
typedef itk::ImageGridSampler< FixedImageType >	ExactMetricImageSamplerType
typedef ExactMetricImageSamplerType::SampleGridSpacingType	ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType	ParametersType
Protected Attributes inherited from itk::MeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedMeshContainerConstPointer	m_FixedMeshContainer
MappedMeshContainerPointer	m_MappedMeshContainer
Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedImageMaskConstPointer	m_FixedImageMask
FixedPointSetConstPointer	m_FixedPointSet
MovingImageMaskConstPointer	m_MovingImageMask
MovingPointSetConstPointer	m_MovingPointSet
unsigned int	m_NumberOfPointsCounted
TransformPointer	m_Transform
bool	m_UseMetricSingleThreaded
Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue
unsigned int	m_ExactMetricEachXNumberOfIterations
ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerPointer	m_ExactMetricSampler
bool	m_ShowExactMetricValue
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration
ElastixPointer	m_Elastix
RegistrationPointer	m_Registration

Member Typedef Documentation

CellInterfaceType

template<class TElastix >

typedef Superclass1::CellInterfaceType elastix::PolydataDummyPenalty< TElastix >::CellInterfaceType

Definition at line 107 of file elxPolydataDummyPenalty.h.

CombinationTransformType

template<class TElastix >

typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro( FixedImageDimension ) > elastix::PolydataDummyPenalty< TElastix >::CombinationTransformType

Definition at line 136 of file elxPolydataDummyPenalty.h.

ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::PolydataDummyPenalty< TElastix >::ConfigurationPointer

Definition at line 144 of file elxPolydataDummyPenalty.h.

ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::PolydataDummyPenalty< TElastix >::ConfigurationType

Definition at line 143 of file elxPolydataDummyPenalty.h.

ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::PolydataDummyPenalty< TElastix >::ConstPointer

Definition at line 79 of file elxPolydataDummyPenalty.h.

CoordinateRepresentationType

template<class TElastix >

typedef Superclass1::CoordinateRepresentationType elastix::PolydataDummyPenalty< TElastix >::CoordinateRepresentationType

Definition at line 98 of file elxPolydataDummyPenalty.h.

CoordRepType

template<class TElastix >

typedef OutputPointType::CoordRepType elastix::PolydataDummyPenalty< TElastix >::CoordRepType

Definition at line 125 of file elxPolydataDummyPenalty.h.

DerivativeType

template<class TElastix >

typedef Superclass1::DerivativeType elastix::PolydataDummyPenalty< TElastix >::DerivativeType

Definition at line 122 of file elxPolydataDummyPenalty.h.

ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::PolydataDummyPenalty< TElastix >::ElastixPointer

Definition at line 142 of file elxPolydataDummyPenalty.h.

ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::PolydataDummyPenalty< TElastix >::ElastixType

Typedefs inherited from elastix.

Definition at line 141 of file elxPolydataDummyPenalty.h.

FixedImageMaskPointer

template<class TElastix >

typedef Superclass1::FixedImageMaskPointer elastix::PolydataDummyPenalty< TElastix >::FixedImageMaskPointer

Definition at line 118 of file elxPolydataDummyPenalty.h.

FixedImageMaskType

template<class TElastix >

typedef Superclass1::FixedImageMaskType elastix::PolydataDummyPenalty< TElastix >::FixedImageMaskType

Definition at line 117 of file elxPolydataDummyPenalty.h.

FixedImageType

template<class TElastix >

typedef Superclass2::FixedImageType elastix::PolydataDummyPenalty< TElastix >::FixedImageType

Definition at line 148 of file elxPolydataDummyPenalty.h.

FixedMeshConstPointer

template<class TElastix >

typedef Superclass1::FixedMeshConstPointer elastix::PolydataDummyPenalty< TElastix >::FixedMeshConstPointer

Definition at line 96 of file elxPolydataDummyPenalty.h.

FixedMeshContainerPointer

template<class TElastix >

typedef Superclass1::FixedMeshContainerPointer elastix::PolydataDummyPenalty< TElastix >::FixedMeshContainerPointer

Definition at line 102 of file elxPolydataDummyPenalty.h.

FixedMeshContainerType

template<class TElastix >

typedef Superclass1::FixedMeshContainerType elastix::PolydataDummyPenalty< TElastix >::FixedMeshContainerType

Definition at line 101 of file elxPolydataDummyPenalty.h.

FixedMeshPointer

template<class TElastix >

typedef Superclass1::FixedMeshPointer elastix::PolydataDummyPenalty< TElastix >::FixedMeshPointer

Definition at line 95 of file elxPolydataDummyPenalty.h.

FixedMeshType

template<class TElastix >

typedef Superclass1::FixedMeshType elastix::PolydataDummyPenalty< TElastix >::FixedMeshType

Typedefs from the superclass.

Definition at line 94 of file elxPolydataDummyPenalty.h.

FixedPointSetConstPointer

template<class TElastix >

typedef Superclass1::FixedPointSetConstPointer elastix::PolydataDummyPenalty< TElastix >::FixedPointSetConstPointer

Definition at line 100 of file elxPolydataDummyPenalty.h.

FixedPointSetType

template<class TElastix >

typedef Superclass1::FixedPointSetType elastix::PolydataDummyPenalty< TElastix >::FixedPointSetType

Definition at line 99 of file elxPolydataDummyPenalty.h.

ImageType

template<class TElastix >

typedef FixedImageType elastix::PolydataDummyPenalty< TElastix >::ImageType

Definition at line 162 of file elxPolydataDummyPenalty.h.

InitialTransformType

template<class TElastix >

typedef CombinationTransformType::InitialTransformType elastix::PolydataDummyPenalty< TElastix >::InitialTransformType

Definition at line 138 of file elxPolydataDummyPenalty.h.

InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::PolydataDummyPenalty< TElastix >::InputPointType

Definition at line 112 of file elxPolydataDummyPenalty.h.

ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::PolydataDummyPenalty< TElastix >::ITKBaseType

Definition at line 147 of file elxPolydataDummyPenalty.h.

MappedMeshContainerPointer

template<class TElastix >

typedef Superclass1::MappedMeshContainerPointer elastix::PolydataDummyPenalty< TElastix >::MappedMeshContainerPointer

Definition at line 104 of file elxPolydataDummyPenalty.h.

MappedMeshContainerType

template<class TElastix >

typedef Superclass1::MappedMeshContainerType elastix::PolydataDummyPenalty< TElastix >::MappedMeshContainerType

Definition at line 103 of file elxPolydataDummyPenalty.h.

MeasureType

template<class TElastix >

typedef Superclass1::MeasureType elastix::PolydataDummyPenalty< TElastix >::MeasureType

Definition at line 121 of file elxPolydataDummyPenalty.h.

MeshIdType

template<class TElastix >

typedef Superclass1::MeshIdType elastix::PolydataDummyPenalty< TElastix >::MeshIdType

Definition at line 127 of file elxPolydataDummyPenalty.h.

MeshType

template<class TElastix >

typedef FixedMeshType elastix::PolydataDummyPenalty< TElastix >::MeshType

Definition at line 161 of file elxPolydataDummyPenalty.h.

MovingImageMaskPointer

template<class TElastix >

typedef Superclass1::MovingImageMaskPointer elastix::PolydataDummyPenalty< TElastix >::MovingImageMaskPointer

Definition at line 120 of file elxPolydataDummyPenalty.h.

MovingImageMaskType

template<class TElastix >

typedef Superclass1::MovingImageMaskType elastix::PolydataDummyPenalty< TElastix >::MovingImageMaskType

Definition at line 119 of file elxPolydataDummyPenalty.h.

MovingImageType

template<class TElastix >

typedef Superclass2::MovingImageType elastix::PolydataDummyPenalty< TElastix >::MovingImageType

Definition at line 149 of file elxPolydataDummyPenalty.h.

MovingPointSetConstPointer

template<class TElastix >

typedef Superclass1::MovingPointSetConstPointer elastix::PolydataDummyPenalty< TElastix >::MovingPointSetConstPointer

Definition at line 106 of file elxPolydataDummyPenalty.h.

MovingPointSetType

template<class TElastix >

typedef Superclass1::MovingPointSetType elastix::PolydataDummyPenalty< TElastix >::MovingPointSetType

Definition at line 105 of file elxPolydataDummyPenalty.h.

ObjectType

template<class TElastix >

typedef itk::Object elastix::PolydataDummyPenalty< TElastix >::ObjectType

Other typedef's.

Definition at line 129 of file elxPolydataDummyPenalty.h.

OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::PolydataDummyPenalty< TElastix >::OutputPointType

Definition at line 113 of file elxPolydataDummyPenalty.h.

ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::PolydataDummyPenalty< TElastix >::ParametersType

Definition at line 123 of file elxPolydataDummyPenalty.h.

Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::PolydataDummyPenalty< TElastix >::Pointer

Definition at line 78 of file elxPolydataDummyPenalty.h.

PointSetType

template<class TElastix >

typedef FixedPointSetType elastix::PolydataDummyPenalty< TElastix >::PointSetType

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 160 of file elxPolydataDummyPenalty.h.

RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::PolydataDummyPenalty< TElastix >::RegistrationPointer

Definition at line 146 of file elxPolydataDummyPenalty.h.

RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::PolydataDummyPenalty< TElastix >::RegistrationType

Definition at line 145 of file elxPolydataDummyPenalty.h.

Self

template<class TElastix >

typedef PolydataDummyPenalty elastix::PolydataDummyPenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 73 of file elxPolydataDummyPenalty.h.

Superclass1

template<class TElastix >

typedef itk::MeshPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType > elastix::PolydataDummyPenalty< TElastix >::Superclass1

Definition at line 76 of file elxPolydataDummyPenalty.h.

Superclass2

template<class TElastix >

typedef MetricBase< TElastix > elastix::PolydataDummyPenalty< TElastix >::Superclass2

Definition at line 77 of file elxPolydataDummyPenalty.h.

TransformJacobianType

template<class TElastix >

typedef Superclass1::TransformJacobianType elastix::PolydataDummyPenalty< TElastix >::TransformJacobianType

Definition at line 115 of file elxPolydataDummyPenalty.h.

TransformParametersType

template<class TElastix >

typedef Superclass1::TransformParametersType elastix::PolydataDummyPenalty< TElastix >::TransformParametersType

Definition at line 114 of file elxPolydataDummyPenalty.h.

TransformPointer

template<class TElastix >

typedef Superclass1::TransformPointer elastix::PolydataDummyPenalty< TElastix >::TransformPointer

Definition at line 111 of file elxPolydataDummyPenalty.h.

TransformType

template<class TElastix >

typedef Superclass1::TransformType elastix::PolydataDummyPenalty< TElastix >::TransformType

Definition at line 110 of file elxPolydataDummyPenalty.h.

Constructor & Destructor Documentation

PolydataDummyPenalty() [1/2]

template<class TElastix >

elastix::PolydataDummyPenalty< TElastix >::PolydataDummyPenalty ( )

protected

The constructor.

~PolydataDummyPenalty()

template<class TElastix >

virtual elastix::PolydataDummyPenalty< TElastix >::~PolydataDummyPenalty ( )

inlineprotectedvirtual

The destructor.

Definition at line 202 of file elxPolydataDummyPenalty.h.

PolydataDummyPenalty() [2/2]

template<class TElastix >

elastix::PolydataDummyPenalty< TElastix >::PolydataDummyPenalty ( const Self &  )

private

The private constructor.

Member Function Documentation

AfterEachIteration()

template<class TElastix >

virtual void elastix::PolydataDummyPenalty< TElastix >::AfterEachIteration ( void  )

virtual

Reimplemented from elastix::BaseComponent.

AfterEachResolution()

template<class TElastix >

virtual void elastix::PolydataDummyPenalty< TElastix >::AfterEachResolution ( void  )

virtual

Reimplemented from elastix::BaseComponent.

BeforeAllBase()

template<class TElastix >

virtual int elastix::PolydataDummyPenalty< TElastix >::BeforeAllBase ( void  )

virtual

Do some things before registration:

• Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

BeforeRegistration()

template<class TElastix >

virtual void elastix::PolydataDummyPenalty< TElastix >::BeforeRegistration ( void  )

virtual

Reimplemented from elastix::BaseComponent.

elxClassNameMacro()

template<class TElastix >

elastix::PolydataDummyPenalty< TElastix >::elxClassNameMacro

(

"PolydataDummyPenalty< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "PolydataDummyPenalty")

GetClassName()

template<class TElastix >

virtual const char* elastix::PolydataDummyPenalty< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

Initialize()

template<class TElastix >

virtual void elastix::PolydataDummyPenalty< TElastix >::Initialize ( void  ) throw ( itk::ExceptionObject )

virtual

Typedef for timer. Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::MeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >.

itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::PolydataDummyPenalty< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned	int,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::PolydataDummyPenalty< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned	int,
		MovingImageType::ImageDimension
	)

New()

template<class TElastix >

static Pointer elastix::PolydataDummyPenalty< TElastix >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TElastix >

void elastix::PolydataDummyPenalty< TElastix >::operator= ( const Self &  )

private

The private copy constructor.

ReadMesh()

template<class TElastix >

unsigned int elastix::PolydataDummyPenalty< TElastix >::ReadMesh	(	const std::string &	meshFileName,
		typename FixedMeshType::Pointer &	mesh
	)

Function to read the corresponding points.

ReadTransformixPoints()

template<class TElastix >

unsigned int elastix::PolydataDummyPenalty< TElastix >::ReadTransformixPoints	(	const std::string &	filename,
		typename MeshType::Pointer &	mesh
	)

SelectNewSamples()

template<class TElastix >

virtual void elastix::PolydataDummyPenalty< TElastix >::SelectNewSamples ( void  )

inlinevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 195 of file elxPolydataDummyPenalty.h.

WriteResultMesh()

template<class TElastix >

void elastix::PolydataDummyPenalty< TElastix >::WriteResultMesh	(	const char *	filename,
		MeshIdType	meshId
	)

Field Documentation

m_NumberOfMeshes

template<class TElastix >

unsigned int elastix::PolydataDummyPenalty< TElastix >::m_NumberOfMeshes

private

Definition at line 211 of file elxPolydataDummyPenalty.h.