#include <elxAffineLogTransform.h>

Detailed Description

template<class TElastix>
class elastix::AffineLogTransformElastix< TElastix >

This transform is an affine transformation, with a different parametrisation than the usual one.

Warning: : the behaviour of this transform might still change in the future. It is still experimental.

See also: AffineLogTransform

Definition at line 43 of file elxAffineLogTransform.h.

Inheritance diagram for elastix::AffineLogTransformElastix< TElastix >:

Public Types
typedef AffineLogTransformType::Pointer	AffineLogTransformPointer

typedef itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >	AffineLogTransformType

typedef Superclass2::CombinationTransformType	CombinationTransformType

typedef Superclass2::ConfigurationPointer	ConfigurationPointer

typedef Superclass2::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass2::CoordRepType	CoordRepType

typedef FixedImageType::DirectionType	DirectionType

typedef Superclass2::ElastixPointer	ElastixPointer

typedef Superclass2::ElastixType	ElastixType

typedef Superclass2::FixedImageType	FixedImageType

typedef FixedImageType::IndexType	IndexType

typedef IndexType::IndexValueType	IndexValueType

typedef Superclass1::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass1::InputPointType	InputPointType

typedef Superclass1::InputVectorType	InputVectorType

typedef Superclass1::InputVnlVectorType	InputVnlVectorType

typedef Superclass2::ITKBaseType	ITKBaseType

typedef Superclass1::JacobianType	JacobianType

typedef Superclass2::MovingImageType	MovingImageType

typedef Superclass1::NumberOfParametersType	NumberOfParametersType

typedef AffineLogTransformType::OffsetType	OffsetType

typedef Superclass1::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass1::OutputPointType	OutputPointType

typedef Superclass1::OutputVectorType	OutputVectorType

typedef Superclass1::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass1::ParametersType	ParametersType

typedef itk::SmartPointer< Self >	Pointer

typedef FixedImageType::PointType	PointType

typedef FixedImageType::RegionType	RegionType

typedef Superclass2::RegistrationPointer	RegistrationPointer

typedef Superclass2::RegistrationType	RegistrationType

typedef Superclass1::ScalarType	ScalarType

typedef Superclass2::ScalesType	ScalesType

typedef AffineLogTransformElastix	Self

typedef FixedImageType::SizeType	SizeType

typedef FixedImageType::SpacingType	SpacingType

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >	Superclass1

typedef elx::TransformBase< TElastix >	Superclass2

typedef TransformInitializerType::Pointer	TransformInitializerPointer

typedef itk::CenteredTransformInitializer< AffineLogTransformType, FixedImageType, MovingImageType >	TransformInitializerType

Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const Self >	ConstPointer

typedef CurrentTransformType::ConstPointer	CurrentTransformConstPointer

typedef CurrentTransformType::InverseTransformBasePointer	CurrentTransformInverseTransformBasePointer

typedef CurrentTransformType::InverseTransformBaseType	CurrentTransformInverseTransformBaseType

typedef CurrentTransformType::Pointer	CurrentTransformPointer

typedef Superclass	CurrentTransformType

typedef Superclass::DerivativeType	DerivativeType

typedef void(Self::*	EvaluateJacobianWithImageGradientProductFunctionPointer) (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

typedef Superclass::FixedParametersType	FixedParametersType

typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer) (const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer2) (const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer) (const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer2) (const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetSparseJacobianFunctionPointer) (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetSpatialHessianFunctionPointer) (const InputPointType &, SpatialHessianType &) const

typedef void(Self::*	GetSpatialJacobianFunctionPointer) (const InputPointType &, SpatialJacobianType &) const

typedef InitialTransformType::ConstPointer	InitialTransformConstPointer

typedef InitialTransformType::InverseTransformBasePointer	InitialTransformInverseTransformBasePointer

typedef InitialTransformType::InverseTransformBaseType	InitialTransformInverseTransformBaseType

typedef InitialTransformType::Pointer	InitialTransformPointer

typedef Superclass	InitialTransformType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef Superclass::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef Superclass::MovingImageGradientType	MovingImageGradientType

typedef Superclass::MovingImageGradientValueType	MovingImageGradientValueType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedCombinationTransform	Self

typedef Superclass::SpatialHessianType	SpatialHessianType

typedef Superclass::SpatialJacobianType	SpatialJacobianType

typedef AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >	Superclass

typedef Superclass::TransformCategoryType	TransformCategoryType

typedef OutputPointType(Self::*	TransformPointFunctionPointer) (const InputPointType &) const

typedef Superclass::TransformType	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass ::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef SpatialJacobianType::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef std::vector< SpatialHessianType >	JacobianOfSpatialHessianType

typedef std::vector< SpatialJacobianType >	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef OutputCovariantVectorType	MovingImageGradientType

typedef MovingImageGradientType::ValueType	MovingImageGradientValueType

typedef std::vector< unsigned long >	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass ::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedTransform	Self

typedef FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >	SpatialHessianType

typedef Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >	SpatialJacobianType

typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	Superclass

typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from elastix::TransformBase< TElastix >
typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType

typedef ConfigurationType ::CommandLineArgumentMapType	CommandLineArgumentMapType

typedef ConfigurationType ::CommandLineEntryType	CommandLineEntryType

typedef ComponentDatabase	ComponentDatabaseType

typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType

typedef Superclass::ConfigurationPointer	ConfigurationPointer

typedef Superclass::ConfigurationType	ConfigurationType

typedef ElastixType::CoordRepType	CoordRepType

typedef itk::Image< VectorPixelType, FixedImageDimension >	DeformationFieldImageType

typedef Superclass::ElastixPointer	ElastixPointer

typedef Superclass::ElastixType	ElastixType

typedef ElastixType::FixedImageType	FixedImageType

typedef CombinationTransformType::InitialTransformType	InitialTransformType

typedef ITKBaseType::InputPointType	InputPointType

typedef itk::AdvancedTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension), itkGetStaticConstMacro(MovingImageDimension) >	ITKBaseType

typedef RegistrationType::ITKBaseType	ITKRegistrationType

typedef ElastixType::MovingImageType	MovingImageType

typedef itk::Object	ObjectType

typedef ITKRegistrationType::OptimizerType	OptimizerType

typedef ITKBaseType::OutputPointType	OutputPointType

typedef ElastixType::ParameterMapType	ParameterMapType

typedef ITKBaseType::ParametersType	ParametersType

typedef elx::ProgressCommand	ProgressCommandType

typedef ComponentDatabase::PtrToCreator	PtrToCreator

typedef Superclass::RegistrationPointer	RegistrationPointer

typedef Superclass::RegistrationType	RegistrationType

typedef OptimizerType::ScalesType	ScalesType

typedef TransformBase	Self

typedef BaseComponentSE< TElastix >	Superclass

typedef ParametersType::ValueType	ValueType

typedef itk::Vector< float, FixedImageDimension >	VectorPixelType

Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer	ConfigurationPointer

typedef ElastixType::ConfigurationType	ConfigurationType

typedef itk::WeakPointer< ElastixType >	ElastixPointer

typedef TElastix	ElastixType

typedef RegistrationType *	RegistrationPointer

typedef ElastixType::RegistrationBaseType	RegistrationType

typedef BaseComponentSE	Self

typedef BaseComponent	Superclass

Public Member Functions
virtual void	BeforeRegistration (void)

	elxClassNameMacro ("AffineLogTransform")

virtual const char *	GetClassName () const

virtual void	InitializeTransform (void)

	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)

virtual void	ReadFromFile (void)

virtual void	SetScales (void)

virtual void	WriteToFile (const ParametersType &param) const

Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual CurrentTransformType *	GetCurrentTransform ()

virtual const CurrentTransformType *	GetCurrentTransform ()

virtual const FixedParametersType &	GetFixedParameters (void) const

virtual bool	GetHasNonZeroSpatialHessian (void) const

virtual InitialTransformType *	GetInitialTransform ()

virtual const InitialTransformType *	GetInitialTransform ()

virtual bool	GetInverse (Self *inverse) const

virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual const TransformTypePointer	GetNthTransform (SizeValueType n) const

virtual NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const

virtual NumberOfParametersType	GetNumberOfParameters (void) const

virtual SizeValueType	GetNumberOfTransforms (void) const

virtual const ParametersType &	GetParameters (void) const

virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const

virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const

virtual TransformCategoryType	GetTransformCategory () const

virtual bool	GetUseAddition () const

virtual bool	GetUseComposition () const

virtual bool	HasNonZeroJacobianOfSpatialHessian (void) const

virtual bool	IsLinear (void) const

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

virtual void	SetCurrentTransform (CurrentTransformType *_arg)

virtual void	SetFixedParameters (const FixedParametersType &fixedParam)

virtual void	SetInitialTransform (InitialTransformType *_arg)

virtual void	SetParameters (const ParametersType &param)

virtual void	SetParametersByValue (const ParametersType &param)

virtual void	SetUseAddition (bool _arg)

virtual void	SetUseComposition (bool _arg)

virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const

virtual OutputPointType	TransformPoint (const InputPointType &point) const

virtual OutputVectorType	TransformVector (const InputVectorType &) const

virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const

Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const

virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const

virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const

virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const=0

virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const=0

	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Public Member Functions inherited from elastix::TransformBase< TElastix >
virtual void	AfterRegistrationBase (void)

virtual int	BeforeAllBase (void)

virtual int	BeforeAllTransformix (void)

virtual void	BeforeRegistrationBase (void)

virtual void	ComputeDeterminantOfSpatialJacobian (void) const

virtual void	ComputeSpatialJacobian (void) const

virtual void	CreateTransformParametersMap (const ParametersType &param, ParameterMapType *paramsMap) const

DeformationFieldImageType::Pointer	GenerateDeformationFieldImage (void) const

virtual const CombinationTransformType *	GetAsCombinationTransform (void) const

virtual CombinationTransformType *	GetAsCombinationTransform (void)

virtual ITKBaseType *	GetAsITKBaseType (void)

virtual const ITKBaseType *	GetAsITKBaseType (void) const

virtual const InitialTransformType *	GetInitialTransform (void) const

virtual const char *	GetTransformParametersFileName () const

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	ReadInitialTransformFromFile (const char *transformParameterFileName)

virtual void	ReadInitialTransformFromVector (const vcl_size_t index)

virtual void	SetFinalParameters (void)

virtual void	SetInitialTransform (InitialTransformType *_arg)

virtual void	SetReadWriteTransformParameters (const bool _arg)

virtual void	SetTransformParametersFileName (const char *filename)

virtual void	TransformPoints (void) const

virtual void	TransformPointsAllPoints (void) const

virtual void	TransformPointsSomePoints (const std::string filename) const

virtual void	TransformPointsSomePointsVTK (const std::string filename) const

void	WriteDeformationFieldImage (typename DeformationFieldImageType::Pointer) const

virtual void	WriteToFile (void) const

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationType *	GetConfiguration (void) const

virtual ElastixType *	GetElastix (void) const

virtual RegistrationPointer	GetRegistration (void) const

virtual void	SetConfiguration (ConfigurationType *_arg)

virtual void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)

virtual void	AfterEachIterationBase (void)

virtual void	AfterEachResolution (void)

virtual void	AfterEachResolutionBase (void)

virtual void	AfterRegistration (void)

virtual int	BeforeAll (void)

virtual void	BeforeEachResolution (void)

virtual void	BeforeEachResolutionBase (void)

std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const

virtual const char *	elxGetClassName (void) const

virtual const char *	GetComponentLabel (void) const

	itkTypeMacroNoParent (BaseComponent)

virtual void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer	New ()

Protected Member Functions
	AffineLogTransformElastix ()

virtual bool	ReadCenterOfRotationPoint (InputPointType &rotationPoint) const

virtual	~AffineLogTransformElastix ()

Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
	AdvancedCombinationTransform ()

void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const

virtual void	NoCurrentTransformSet (void) const throw ( ExceptionObject )

OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const

OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const

OutputPointType	TransformPointUseAddition (const InputPointType &point) const

OutputPointType	TransformPointUseComposition (const InputPointType &point) const

virtual void	UpdateCombinationMethod (void)

virtual	~AdvancedCombinationTransform ()

Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
	AdvancedTransform ()

	AdvancedTransform (NumberOfParametersType numberOfParameters)

virtual	~AdvancedTransform ()

Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const

void	AutomaticScalesEstimationStackTransform (const unsigned int &numSubTransforms, ScalesType &scales) const

	TransformBase ()

virtual	~TransformBase ()

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()

virtual	~BaseComponentSE ()

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()

virtual	~BaseComponent ()

Private Member Functions
	AffineLogTransformElastix (const Self &)

void	operator= (const Self &)

Private Attributes
AffineLogTransformPointer	m_AffineLogTransform

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
CurrentTransformPointer	m_CurrentTransform

InitialTransformPointer	m_InitialTransform

EvaluateJacobianWithImageGradientProductFunctionPointer	m_SelectedEvaluateJacobianWithImageGradientProductFunction

GetJacobianOfSpatialHessianFunctionPointer	m_SelectedGetJacobianOfSpatialHessianFunction

GetJacobianOfSpatialHessianFunctionPointer2	m_SelectedGetJacobianOfSpatialHessianFunction2

GetJacobianOfSpatialJacobianFunctionPointer	m_SelectedGetJacobianOfSpatialJacobianFunction

GetJacobianOfSpatialJacobianFunctionPointer2	m_SelectedGetJacobianOfSpatialJacobianFunction2

GetSparseJacobianFunctionPointer	m_SelectedGetSparseJacobianFunction

GetSpatialHessianFunctionPointer	m_SelectedGetSpatialHessianFunction

GetSpatialJacobianFunctionPointer	m_SelectedGetSpatialJacobianFunction

TransformPointFunctionPointer	m_SelectedTransformPointFunction

bool	m_UseAddition

bool	m_UseComposition

Protected Attributes inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian

bool	m_HasNonZeroSpatialHessian

Protected Attributes inherited from elastix::TransformBase< TElastix >
ParametersType	m_FinalParameters

std::string	m_TransformParametersFileName

ParametersType *	m_TransformParametersPointer

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration

ElastixPointer	m_Elastix

RegistrationPointer	m_Registration

Member Typedef Documentation

◆ AffineLogTransformPointer

template<class TElastix >

typedef AffineLogTransformType::Pointer elastix::AffineLogTransformElastix< TElastix >::AffineLogTransformPointer

Definition at line 96 of file elxAffineLogTransform.h.

◆ AffineLogTransformType

template<class TElastix >

typedef itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AffineLogTransformElastix< TElastix >::AffineLogTransformType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform

Definition at line 64 of file elxAffineLogTransform.h.

◆ CombinationTransformType

template<class TElastix >

typedef Superclass2::CombinationTransformType elastix::AffineLogTransformElastix< TElastix >::CombinationTransformType

Definition at line 110 of file elxAffineLogTransform.h.

◆ ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::AffineLogTransformElastix< TElastix >::ConfigurationPointer

Definition at line 103 of file elxAffineLogTransform.h.

◆ ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::AffineLogTransformElastix< TElastix >::ConfigurationType

Definition at line 102 of file elxAffineLogTransform.h.

◆ ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::AffineLogTransformElastix< TElastix >::ConstPointer

Definition at line 58 of file elxAffineLogTransform.h.

◆ CoordRepType

template<class TElastix >

typedef Superclass2::CoordRepType elastix::AffineLogTransformElastix< TElastix >::CoordRepType

Definition at line 106 of file elxAffineLogTransform.h.

◆ DirectionType

template<class TElastix >

typedef FixedImageType::DirectionType elastix::AffineLogTransformElastix< TElastix >::DirectionType

Definition at line 119 of file elxAffineLogTransform.h.

◆ ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::AffineLogTransformElastix< TElastix >::ElastixPointer

Definition at line 101 of file elxAffineLogTransform.h.

◆ ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::AffineLogTransformElastix< TElastix >::ElastixType

Typedef's inherited from TransformBase.

Definition at line 100 of file elxAffineLogTransform.h.

◆ FixedImageType

template<class TElastix >

typedef Superclass2::FixedImageType elastix::AffineLogTransformElastix< TElastix >::FixedImageType

Definition at line 107 of file elxAffineLogTransform.h.

◆ IndexType

template<class TElastix >

typedef FixedImageType::IndexType elastix::AffineLogTransformElastix< TElastix >::IndexType

Other typedef's.

Definition at line 113 of file elxAffineLogTransform.h.

◆ IndexValueType

template<class TElastix >

typedef IndexType::IndexValueType elastix::AffineLogTransformElastix< TElastix >::IndexValueType

Definition at line 114 of file elxAffineLogTransform.h.

◆ InputCovariantVectorType

template<class TElastix >

typedef Superclass1::InputCovariantVectorType elastix::AffineLogTransformElastix< TElastix >::InputCovariantVectorType

Definition at line 91 of file elxAffineLogTransform.h.

◆ InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::AffineLogTransformElastix< TElastix >::InputPointType

Definition at line 87 of file elxAffineLogTransform.h.

◆ InputVectorType

template<class TElastix >

typedef Superclass1::InputVectorType elastix::AffineLogTransformElastix< TElastix >::InputVectorType

Definition at line 89 of file elxAffineLogTransform.h.

◆ InputVnlVectorType

template<class TElastix >

typedef Superclass1::InputVnlVectorType elastix::AffineLogTransformElastix< TElastix >::InputVnlVectorType

Definition at line 93 of file elxAffineLogTransform.h.

◆ ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::AffineLogTransformElastix< TElastix >::ITKBaseType

Definition at line 109 of file elxAffineLogTransform.h.

◆ JacobianType

template<class TElastix >

typedef Superclass1::JacobianType elastix::AffineLogTransformElastix< TElastix >::JacobianType

Definition at line 85 of file elxAffineLogTransform.h.

◆ MovingImageType

template<class TElastix >

typedef Superclass2::MovingImageType elastix::AffineLogTransformElastix< TElastix >::MovingImageType

Definition at line 108 of file elxAffineLogTransform.h.

◆ NumberOfParametersType

template<class TElastix >

typedef Superclass1::NumberOfParametersType elastix::AffineLogTransformElastix< TElastix >::NumberOfParametersType

Definition at line 84 of file elxAffineLogTransform.h.

◆ OffsetType

template<class TElastix >

typedef AffineLogTransformType::OffsetType elastix::AffineLogTransformElastix< TElastix >::OffsetType

Definition at line 97 of file elxAffineLogTransform.h.

◆ OutputCovariantVectorType

template<class TElastix >

typedef Superclass1::OutputCovariantVectorType elastix::AffineLogTransformElastix< TElastix >::OutputCovariantVectorType

Definition at line 92 of file elxAffineLogTransform.h.

◆ OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::AffineLogTransformElastix< TElastix >::OutputPointType

Definition at line 88 of file elxAffineLogTransform.h.

◆ OutputVectorType

template<class TElastix >

typedef Superclass1::OutputVectorType elastix::AffineLogTransformElastix< TElastix >::OutputVectorType

Definition at line 90 of file elxAffineLogTransform.h.

◆ OutputVnlVectorType

template<class TElastix >

typedef Superclass1::OutputVnlVectorType elastix::AffineLogTransformElastix< TElastix >::OutputVnlVectorType

Definition at line 94 of file elxAffineLogTransform.h.

◆ ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::AffineLogTransformElastix< TElastix >::ParametersType

Definition at line 83 of file elxAffineLogTransform.h.

◆ Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::AffineLogTransformElastix< TElastix >::Pointer

Definition at line 57 of file elxAffineLogTransform.h.

◆ PointType

template<class TElastix >

typedef FixedImageType::PointType elastix::AffineLogTransformElastix< TElastix >::PointType

Definition at line 116 of file elxAffineLogTransform.h.

◆ RegionType

template<class TElastix >

typedef FixedImageType::RegionType elastix::AffineLogTransformElastix< TElastix >::RegionType

Definition at line 118 of file elxAffineLogTransform.h.

◆ RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::AffineLogTransformElastix< TElastix >::RegistrationPointer

Definition at line 105 of file elxAffineLogTransform.h.

◆ RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::AffineLogTransformElastix< TElastix >::RegistrationType

Definition at line 104 of file elxAffineLogTransform.h.

◆ ScalarType

template<class TElastix >

typedef Superclass1::ScalarType elastix::AffineLogTransformElastix< TElastix >::ScalarType

Typedefs inherited from the superclass.

Definition at line 82 of file elxAffineLogTransform.h.

◆ ScalesType

template<class TElastix >

typedef Superclass2::ScalesType elastix::AffineLogTransformElastix< TElastix >::ScalesType

For scales setting in the optimizer

Definition at line 126 of file elxAffineLogTransform.h.

◆ Self

template<class TElastix >

typedef AffineLogTransformElastix elastix::AffineLogTransformElastix< TElastix >::Self

Standard ITK-stuff.

Definition at line 52 of file elxAffineLogTransform.h.

◆ SizeType

template<class TElastix >

typedef FixedImageType::SizeType elastix::AffineLogTransformElastix< TElastix >::SizeType

Definition at line 115 of file elxAffineLogTransform.h.

◆ SpacingType

template<class TElastix >

typedef FixedImageType::SpacingType elastix::AffineLogTransformElastix< TElastix >::SpacingType

Definition at line 117 of file elxAffineLogTransform.h.

◆ Superclass1

template<class TElastix >

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AffineLogTransformElastix< TElastix >::Superclass1

Definition at line 55 of file elxAffineLogTransform.h.

◆ Superclass2

template<class TElastix >

typedef elx::TransformBase< TElastix > elastix::AffineLogTransformElastix< TElastix >::Superclass2

Definition at line 56 of file elxAffineLogTransform.h.

◆ TransformInitializerPointer

template<class TElastix >

typedef TransformInitializerType::Pointer elastix::AffineLogTransformElastix< TElastix >::TransformInitializerPointer

Definition at line 123 of file elxAffineLogTransform.h.

◆ TransformInitializerType

template<class TElastix >

typedef itk::CenteredTransformInitializer< AffineLogTransformType, FixedImageType, MovingImageType > elastix::AffineLogTransformElastix< TElastix >::TransformInitializerType

Definition at line 122 of file elxAffineLogTransform.h.

Constructor & Destructor Documentation

◆ AffineLogTransformElastix() [1/2]

template<class TElastix >

elastix::AffineLogTransformElastix< TElastix >::AffineLogTransformElastix ( )

protected

The constructor.

◆ ~AffineLogTransformElastix()

template<class TElastix >

virtual elastix::AffineLogTransformElastix< TElastix >::~AffineLogTransformElastix ( )

inlineprotectedvirtual

The destructor.

Definition at line 177 of file elxAffineLogTransform.h.

◆ AffineLogTransformElastix() [2/2]

template<class TElastix >

elastix::AffineLogTransformElastix< TElastix >::AffineLogTransformElastix ( const Self & )

private

The private constructor.

Member Function Documentation

◆ BeforeRegistration()

template<class TElastix >

virtual void elastix::AffineLogTransformElastix< TElastix >::BeforeRegistration ( void )

virtual

Execute stuff before the actual registration:

Call InitializeTransform
Set the scales.

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >

elastix::AffineLogTransformElastix< TElastix >::elxClassNameMacro ( "AffineLogTransform" )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "AffineLogTransform")

◆ GetClassName()

template<class TElastix >

virtual const char* elastix::AffineLogTransformElastix< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

◆ InitializeTransform()

template<class TElastix >

virtual void elastix::AffineLogTransformElastix< TElastix >::InitializeTransform ( void )

virtual

Initialize Transform.

Set all parameters to zero.
Set center of rotation: automatically initialized to the geometric center of the image, or assigned a user entered voxel index, given by the parameter (CenterOfRotation <index-x> <index-y> ...); If an initial transform is present and HowToCombineTransforms is set to "Compose", the initial transform is taken into account while setting the center of rotation.
Set initial translation: the initial translation between fixed and moving image is guessed, if the user has set (AutomaticTransformInitialization "true").

It is not yet possible to enter an initial rotation angle.

◆ itkStaticConstMacro()

template<class TElastix >

elastix::AffineLogTransformElastix< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned	int,
		Superclass2::FixedImageDimension
	)

Dimension of the fixed image.

◆ New()

template<class TElastix >

static Pointer elastix::AffineLogTransformElastix< TElastix >::New ( )

static

Method for creation through the object factory.

◆ operator=()

template<class TElastix >

void elastix::AffineLogTransformElastix< TElastix >::operator= ( const Self & )

private

The private copy constructor.

◆ ReadCenterOfRotationPoint()

template<class TElastix >

virtual bool elastix::AffineLogTransformElastix< TElastix >::ReadCenterOfRotationPoint ( InputPointType & rotationPoint ) const

protectedvirtual

Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates.

◆ ReadFromFile()

template<class TElastix >

virtual void elastix::AffineLogTransformElastix< TElastix >::ReadFromFile ( void )

virtual

Function to read transform-parameters from a file.

It reads the center of rotation and calls the superclass' implementation.

Reimplemented from elastix::TransformBase< TElastix >.

◆ SetScales()

template<class TElastix >

virtual void elastix::AffineLogTransformElastix< TElastix >::SetScales ( void )

virtual

Set the scales

If AutomaticScalesEstimation is "true" estimate scales
If scales are provided by the user use those,
Otherwise use some default value This function is called by BeforeRegistration, after the InitializeTransform function is called

◆ WriteToFile()

template<class TElastix >

virtual void elastix::AffineLogTransformElastix< TElastix >::WriteToFile ( const ParametersType & param ) const

virtual

Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

◆ m_AffineLogTransform

template<class TElastix >

AffineLogTransformPointer elastix::AffineLogTransformElastix< TElastix >::m_AffineLogTransform

private

Definition at line 190 of file elxAffineLogTransform.h.

Detailed Description

template<class TElastix> class elastix::AffineLogTransformElastix< TElastix >

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ AffineLogTransformPointer

◆ AffineLogTransformType

◆ CombinationTransformType

◆ ConfigurationPointer

◆ ConfigurationType

◆ ConstPointer

◆ CoordRepType

◆ DirectionType

◆ ElastixPointer

◆ ElastixType

◆ FixedImageType

◆ IndexType

◆ IndexValueType

◆ InputCovariantVectorType

◆ InputPointType

◆ InputVectorType

◆ InputVnlVectorType

◆ ITKBaseType

◆ JacobianType

◆ MovingImageType

◆ NumberOfParametersType

◆ OffsetType

◆ OutputCovariantVectorType

◆ OutputPointType

◆ OutputVectorType

◆ OutputVnlVectorType

◆ ParametersType

◆ Pointer

◆ PointType

◆ RegionType

◆ RegistrationPointer

◆ RegistrationType

◆ ScalarType

◆ ScalesType

◆ Self

◆ SizeType

◆ SpacingType

◆ Superclass1

◆ Superclass2

◆ TransformInitializerPointer

◆ TransformInitializerType

Constructor & Destructor Documentation

◆ AffineLogTransformElastix() [1/2]

◆ ~AffineLogTransformElastix()

◆ AffineLogTransformElastix() [2/2]

Member Function Documentation

◆ BeforeRegistration()

◆ elxClassNameMacro()

◆ GetClassName()

◆ InitializeTransform()

◆ itkStaticConstMacro()

◆ New()

◆ operator=()

◆ ReadCenterOfRotationPoint()

◆ ReadFromFile()

◆ SetScales()

◆ WriteToFile()

Field Documentation

◆ m_AffineLogTransform

template<class TElastix>
class elastix::AffineLogTransformElastix< TElastix >