elastix::TransformBendingEnergyPenalty< TElastix > Class Template Reference

#include <elxTransformBendingEnergyPenaltyTerm.h>

Inheritance diagram for elastix::TransformBendingEnergyPenalty< TElastix >:

Collaboration diagram for elastix::TransformBendingEnergyPenalty< TElastix >:

Public Types
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer < const Self >	ConstPointer
typedef Superclass1::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass1::DerivativeType	DerivativeType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass1::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass1::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass1::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass1::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass1::FixedImageMaskType	FixedImageMaskType
typedef Superclass1::FixedImagePixelType	FixedImagePixelType
typedef Superclass1::FixedImageRegionType	FixedImageRegionType
typedef Superclass1::FixedImageType	FixedImageType
typedef Superclass1::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass1::GradientImageFilterType	GradientImageFilterType
typedef Superclass1::GradientImagePointer	GradientImagePointer
typedef Superclass1::GradientImageType	GradientImageType
typedef Superclass1::GradientPixelType	GradientPixelType
typedef Superclass1::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass1::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass1::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass1::ImageSamplerType	ImageSamplerType
typedef Superclass1::InputPointType	InputPointType
typedef Superclass1::InterpolatorPointer	InterpolatorPointer
typedef Superclass1::InterpolatorType	InterpolatorType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::MeasureType	MeasureType
typedef Superclass1::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass1::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass1::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass1::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass1::MovingImageMaskType	MovingImageMaskType
typedef Superclass1::MovingImagePixelType	MovingImagePixelType
typedef Superclass1::MovingImageRegionType	MovingImageRegionType
typedef Superclass1::MovingImageType	MovingImageType
typedef Superclass1::OutputPointType	OutputPointType
typedef Superclass1::ParametersType	ParametersType
typedef itk::SmartPointer< Self >	Pointer
typedef Superclass1::RealType	RealType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef TransformBendingEnergyPenalty	Self
typedef itk::TransformBendingEnergyPenaltyTerm < typename MetricBase < TElastix >::FixedImageType, double >	Superclass1
typedef MetricBase< TElastix >	Superclass2
typedef TimerType::Pointer	TimerPointer
typedef tmr::Timer	TimerType
typedef Superclass1::TransformJacobianType	TransformJacobianType
typedef Superclass1::TransformParametersType	TransformParametersType
typedef Superclass1::TransformPointer	TransformPointer
typedef Superclass1::TransformType	TransformType
Public Types inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::DerivativeValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImagePointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::HessianType	HessianType
typedef Superclass::HessianValueType	HessianValueType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InternalMatrixType	InternalMatrixType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType
typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImagePointer	MovingImagePointer
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef Superclass::ScalarType	ScalarType
typedef TransformBendingEnergyPenaltyTerm	Self
typedef Superclass::SpatialHessianType	SpatialHessianType
typedef Superclass::SpatialJacobianType	SpatialJacobianType
typedef TransformPenaltyTerm < MetricBase< TElastix > ::FixedImageType, double >	Superclass
typedef Superclass::ThreaderType	ThreaderType
typedef Superclass::ThreadInfoType	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::DerivativeValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImagePointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::InputPointType	InputPointType
typedef TransformType::InternalMatrixType	InternalMatrixType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef TransformType::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType
typedef TransformType::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImagePointer	MovingImagePointer
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef double	ScalarType
typedef TransformPenaltyTerm	Self
typedef TransformType::SpatialHessianType	SpatialHessianType
typedef TransformType::SpatialJacobianType	SpatialJacobianType
typedef AdvancedImageToImageMetric < MetricBase< TElastix > ::FixedImageType, MetricBase < TElastix >::FixedImageType >	Superclass
typedef Superclass::ThreaderType	ThreaderType
typedef Superclass::ThreadInfoType	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::AdvancedTransformType	TransformType
Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef AdvancedTransform < ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType
typedef AdvancedBSplineDeformableTransform < ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType
typedef AdvancedBSplineDeformableTransform < ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType
typedef AdvancedBSplineDeformableTransform < ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType
typedef AdvancedCombinationTransform < ScalarType, FixedImageDimension >	CombinationTransformType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType
typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer
typedef LimiterFunctionBase < RealType, FixedImageDimension >	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef FixedImageType::PixelType	FixedImagePixelType
typedef FixedImageType::Pointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef vnl_sparse_matrix < HessianValueType >	HessianType
typedef DerivativeType::ValueType	HessianValueType
typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer
typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType
typedef ImageSamplerType::Pointer	ImageSamplerPointer
typedef ImageSamplerBase < FixedImageType >	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType
typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType
typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer
typedef LimiterFunctionBase < RealType, MovingImageDimension >	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef MovingImageType::Pointer	MovingImagePointer
typedef MovingImageType::RegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef TransformType::ScalarType	ScalarType
typedef AdvancedImageToImageMetric	Self
typedef ImageToImageMetric < MetricBase< TElastix > ::FixedImageType, MetricBase < TElastix >::FixedImageType >	Superclass
typedef itk::MultiThreader	ThreaderType
typedef ThreaderType::ThreadInfoStruct	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric < FixedImageType, MovingImageType >	AdvancedMetricType
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ITKBaseType::ParametersValueType	CoordinateRepresentationType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ElastixType::FixedImageType	FixedImageType
typedef itk::PointSet < CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits < CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	FixedPointSetType
typedef FixedImageType::PointType	FixedPointType
typedef FixedPointType::ValueType	FixedPointValueType
typedef AdvancedMetricType::ImageSamplerType	ImageSamplerBaseType
typedef itk::SingleValuedCostFunction	ITKBaseType
typedef ITKBaseType::MeasureType	MeasureType
typedef ElastixType::MovingImageType	MovingImageType
typedef itk::PointSet < CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits < CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	MovingPointSetType
typedef MovingImageType::PointType	MovingPointType
typedef MovingPointType::ValueType	MovingPointValueType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef MetricBase	Self
typedef BaseComponentSE< TElastix >	Superclass
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer	ConfigurationPointer
typedef ElastixType::ConfigurationType	ConfigurationType
typedef ElastixType::Pointer	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
virtual void	BeforeEachResolution (void)
	elxClassNameMacro ("TransformBendingEnergyPenalty")
virtual const char *	GetClassName () const
virtual void	Initialize (void) throw ( itk::ExceptionObject )
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
Public Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
virtual void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const
virtual unsigned int	GetNumberOfSamplesForSelfHessian () const
virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
virtual MeasureType	GetValue (const ParametersType &parameters) const
virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
virtual void	GetValueAndDerivativeSingleThreaded (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
virtual void	SetNumberOfSamplesForSelfHessian (unsigned int _arg)
void	ThreadedGetValueAndDerivative (ThreadIdType threadID)
Public Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
virtual double	GetFixedLimitRangeRatio () const
virtual ImageSamplerType *	GetImageSampler (void) const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
const AdvancedTransformType *	GetTransform (void) const
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
	itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
	itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetNumberOfThreads (ThreadIdType numberOfThreads)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()
Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void	AfterEachIterationBase (void)
virtual void	BeforeEachResolutionBase (void)
virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler (void) const
virtual bool	GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual MeasureType	GetCurrentExactMetricValue (void) const
virtual bool	GetShowExactMetricValue (void) const
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SelectNewSamples (void)
virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationType *	GetConfiguration (void) const
virtual ElastixType *	GetElastix (void) const
virtual RegistrationPointer	GetRegistration (void) const
virtual void	SetConfiguration (ConfigurationType *_arg)
virtual void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
virtual const char *	GetComponentLabel (void) const
virtual void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
static Pointer	New ()

Protected Member Functions
	TransformBendingEnergyPenalty ()
virtual	~TransformBendingEnergyPenalty ()
Protected Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
	TransformBendingEnergyPenaltyTerm ()
virtual	~TransformBendingEnergyPenaltyTerm ()
Protected Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual bool	CheckForBSplineTransform (BSplineTransformPointer &bspline) const
	TransformPenaltyTerm ()
virtual	~TransformPenaltyTerm ()
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
	AdvancedImageToImageMetric ()
virtual void	CheckForAdvancedTransform (void)
virtual void	CheckForBSplineInterpolator (void)
virtual void	CheckForBSplineTransform (void)
virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual void	ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
virtual void	ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
virtual void	InitializeImageSampler (void) throw ( ExceptionObject )
virtual void	InitializeLimiters (void)
virtual void	InitializeThreadingParameters (void) const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback (void) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
virtual	~AdvancedImageToImageMetric ()
Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)
	MetricBase ()
virtual	~MetricBase ()
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()
virtual	~BaseComponentSE ()
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()
virtual	~BaseComponent ()

Private Member Functions
void	operator= (const Self &)
	TransformBendingEnergyPenalty (const Self &)

Additional Inherited Members
Protected Types inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef Superclass::BSplineTransformType	BSplineTransformType
typedef Superclass::CombinationTransformType	CombinationTransformType
typedef Superclass::FixedImageIndexType	FixedImageIndexType
typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ImageGridSampler < FixedImageType >	SelfHessianSamplerType
Protected Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef BSplineTransformType::Pointer	BSplineTransformPointer
typedef AdvancedBSplineDeformableTransform < ScalarType, FixedImageDimension, 3 >	BSplineTransformType
typedef AdvancedCombinationTransform < ScalarType, FixedImageDimension >	CombinationTransformType
typedef Superclass::FixedImageIndexType	FixedImageIndexType
typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer
typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType
typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer
typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType
typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer
typedef GradientImageFilter < MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef TransformType::InputPointType	FixedImagePointType
typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer
typedef AdvancedLinearInterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType
typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType
typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType
typedef MovingImageType::IndexType	MovingImageIndexType
typedef TransformType::OutputPointType	MovingImagePointType
typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer
typedef ReducedDimensionBSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType
Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer	ExactMetricImageSamplerPointer
typedef itk::ImageGridSampler < FixedImageType >	ExactMetricImageSamplerType
typedef ExactMetricImageSamplerType::SampleGridSpacingType	ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType	ParametersType
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
static ITK_THREAD_RETURN_TYPE	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeThreaderCallback (void *arg)
Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
AdvancedTransformType::Pointer	m_AdvancedTransform
BSplineInterpolatorPointer	m_BSplineInterpolator
BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter
FixedImageLimiterPointer	m_FixedImageLimiter
FixedImageLimiterOutputType	m_FixedImageMaxLimit
FixedImageLimiterOutputType	m_FixedImageMinLimit
FixedImagePixelType	m_FixedImageTrueMax
FixedImagePixelType	m_FixedImageTrueMin
AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize
ImageSamplerPointer	m_ImageSampler
bool	m_InterpolatorIsBSpline
bool	m_InterpolatorIsBSplineFloat
bool	m_InterpolatorIsLinear
bool	m_InterpolatorIsReducedBSpline
LinearInterpolatorPointer	m_LinearInterpolator
MovingImageLimiterPointer	m_MovingImageLimiter
MovingImageLimiterOutputType	m_MovingImageMaxLimit
MovingImageLimiterOutputType	m_MovingImageMinLimit
MovingImagePixelType	m_MovingImageTrueMax
MovingImagePixelType	m_MovingImageTrueMin
ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsAdvanced
bool	m_TransformIsBSpline
bool	m_UseMetricSingleThreaded
bool	m_UseMultiThread
bool	m_UseOpenMP
Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue
ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerPointer	m_ExactMetricSampler
bool	m_ShowExactMetricValue
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration
ElastixPointer	m_Elastix
RegistrationPointer	m_Registration

Detailed Description

template<class TElastix>
class elastix::TransformBendingEnergyPenalty< TElastix >

A penalty term based on the bending energy of a thin metal sheet.

[1]: D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, "Nonrigid registration using free-form deformations: Application to breast MR images", IEEE Trans. Med. Imaging 18, 712-721, 1999.
[2]: M. Staring and S. Klein, "Itk::Transforms supporting spatial derivatives"", Insight Journal, http://hdl.handle.net/10380/3215. The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "TransformBendingEnergyPenalty")

Definition at line 46 of file elxTransformBendingEnergyPenaltyTerm.h.

Member Typedef Documentation

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::TransformBendingEnergyPenalty< TElastix >::ConfigurationPointer

Definition at line 132 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::TransformBendingEnergyPenalty< TElastix >::ConfigurationType

Definition at line 131 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::TransformBendingEnergyPenalty< TElastix >::ConstPointer

Definition at line 62 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::CoordinateRepresentationType elastix::TransformBendingEnergyPenalty< TElastix >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 78 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::DerivativeType elastix::TransformBendingEnergyPenalty< TElastix >::DerivativeType

Definition at line 104 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::TransformBendingEnergyPenalty< TElastix >::ElastixPointer

Definition at line 130 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass2::ElastixType elastix::TransformBendingEnergyPenalty< TElastix >::ElastixType

Typedef's inherited from elastix.

Definition at line 129 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageConstPointer elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageConstPointer

Definition at line 83 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageLimiterOutputType elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageLimiterOutputType

Definition at line 116 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageLimiterType elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageLimiterType

Definition at line 113 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageMaskPointer elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageMaskPointer

Definition at line 100 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageMaskType elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageMaskType

Definition at line 99 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImagePixelType elastix::TransformBendingEnergyPenalty< TElastix >::FixedImagePixelType

Definition at line 106 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageRegionType elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageRegionType

Definition at line 84 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::FixedImageType elastix::TransformBendingEnergyPenalty< TElastix >::FixedImageType

Definition at line 82 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::GradientImageFilterPointer elastix::TransformBendingEnergyPenalty< TElastix >::GradientImageFilterPointer

Definition at line 98 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::GradientImageFilterType elastix::TransformBendingEnergyPenalty< TElastix >::GradientImageFilterType

Definition at line 97 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::GradientImagePointer elastix::TransformBendingEnergyPenalty< TElastix >::GradientImagePointer

Definition at line 96 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::GradientImageType elastix::TransformBendingEnergyPenalty< TElastix >::GradientImageType

Definition at line 95 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::GradientPixelType elastix::TransformBendingEnergyPenalty< TElastix >::GradientPixelType

Definition at line 94 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::ImageSampleContainerPointer elastix::TransformBendingEnergyPenalty< TElastix >::ImageSampleContainerPointer

Definition at line 112 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::ImageSampleContainerType elastix::TransformBendingEnergyPenalty< TElastix >::ImageSampleContainerType

Definition at line 110 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::ImageSamplerPointer elastix::TransformBendingEnergyPenalty< TElastix >::ImageSamplerPointer

Definition at line 109 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::ImageSamplerType elastix::TransformBendingEnergyPenalty< TElastix >::ImageSamplerType

Definition at line 108 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::InputPointType elastix::TransformBendingEnergyPenalty< TElastix >::InputPointType

Definition at line 87 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::InterpolatorPointer elastix::TransformBendingEnergyPenalty< TElastix >::InterpolatorPointer

Definition at line 92 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::InterpolatorType elastix::TransformBendingEnergyPenalty< TElastix >::InterpolatorType

Definition at line 91 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::TransformBendingEnergyPenalty< TElastix >::ITKBaseType

Definition at line 135 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MeasureType elastix::TransformBendingEnergyPenalty< TElastix >::MeasureType

Definition at line 103 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageConstPointer elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageConstPointer

Definition at line 81 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageLimiterOutputType elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageLimiterOutputType

Definition at line 118 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageLimiterType elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageLimiterType

Definition at line 114 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageMaskPointer elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageMaskPointer

Definition at line 102 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageMaskType elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageMaskType

Definition at line 101 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImagePixelType elastix::TransformBendingEnergyPenalty< TElastix >::MovingImagePixelType

Definition at line 80 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageRegionType elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageRegionType

Definition at line 107 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::MovingImageType elastix::TransformBendingEnergyPenalty< TElastix >::MovingImageType

Definition at line 79 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::OutputPointType elastix::TransformBendingEnergyPenalty< TElastix >::OutputPointType

Definition at line 88 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::ParametersType elastix::TransformBendingEnergyPenalty< TElastix >::ParametersType

Definition at line 105 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::TransformBendingEnergyPenalty< TElastix >::Pointer

Definition at line 61 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::RealType elastix::TransformBendingEnergyPenalty< TElastix >::RealType

Definition at line 93 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::TransformBendingEnergyPenalty< TElastix >::RegistrationPointer

Definition at line 134 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass2::RegistrationType elastix::TransformBendingEnergyPenalty< TElastix >::RegistrationType

Definition at line 133 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef TransformBendingEnergyPenalty elastix::TransformBendingEnergyPenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 56 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef itk::TransformBendingEnergyPenaltyTerm< typename MetricBase< TElastix >::FixedImageType, double > elastix::TransformBendingEnergyPenalty< TElastix >::Superclass1

Definition at line 59 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef MetricBase< TElastix > elastix::TransformBendingEnergyPenalty< TElastix >::Superclass2

Definition at line 60 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef TimerType::Pointer elastix::TransformBendingEnergyPenalty< TElastix >::TimerPointer

Typedef for timer.

Definition at line 140 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef tmr::Timer elastix::TransformBendingEnergyPenalty< TElastix >::TimerType

Typedef for timer.

Definition at line 138 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::TransformJacobianType elastix::TransformBendingEnergyPenalty< TElastix >::TransformJacobianType

Definition at line 90 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::TransformParametersType elastix::TransformBendingEnergyPenalty< TElastix >::TransformParametersType

Definition at line 89 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::TransformPointer elastix::TransformBendingEnergyPenalty< TElastix >::TransformPointer

Definition at line 86 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

typedef Superclass1::TransformType elastix::TransformBendingEnergyPenalty< TElastix >::TransformType

Definition at line 85 of file elxTransformBendingEnergyPenaltyTerm.h.

Constructor & Destructor Documentation

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::TransformBendingEnergyPenalty ( )

inlineprotected

The constructor.

Definition at line 156 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

virtual elastix::TransformBendingEnergyPenalty< TElastix >::~TransformBendingEnergyPenalty ( )

inlineprotectedvirtual

The destructor.

Definition at line 159 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::TransformBendingEnergyPenalty ( const Self &  )

private

The private constructor.

Member Function Documentation

template<class TElastix >

virtual void elastix::TransformBendingEnergyPenalty< TElastix >::BeforeEachResolution ( void  )

virtual

Do some things before each resolution:

• Set options for SelfHessian

Reimplemented from elastix::BaseComponent.

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::elxClassNameMacro

(

"TransformBendingEnergyPenalty< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "TransformBendingEnergyPenalty")

template<class TElastix >

virtual const char* elastix::TransformBendingEnergyPenalty< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >

virtual void elastix::TransformBendingEnergyPenalty< TElastix >::Initialize ( void  ) throw ( itk::ExceptionObject )

virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >.

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned	int,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned	int,
		MovingImageType::ImageDimension
	)

The moving image dimension.

template<class TElastix >

static Pointer elastix::TransformBendingEnergyPenalty< TElastix >::New ( )

static

Method for creation through the object factory.

template<class TElastix >

void elastix::TransformBendingEnergyPenalty< TElastix >::operator= ( const Self &  )

private

The private copy constructor.