#include <deal.II/distributed/shared_tria.h>

Inheritance diagram for parallel::shared::Triangulation< dim, spacedim >:

Public Member Functions
	Triangulation (MPI_Comm mpi_communicator, const typename ::Triangulation< dim, spacedim >::MeshSmoothing=(::Triangulation< dim, spacedim >::none), const bool allow_artificial_cells=false)

virtual	~Triangulation ()

virtual void	execute_coarsening_and_refinement ()

virtual void	create_triangulation (const std::vector< Point< spacedim > > &vertices, const std::vector< CellData< dim > > &cells, const SubCellData &subcelldata)

const std::vector< types::subdomain_id > &	get_true_subdomain_ids_of_cells () const

bool	with_artificial_cells () const

Public Member Functions inherited from parallel::Triangulation< dim, spacedim >
	Triangulation (MPI_Comm mpi_communicator, const typename ::Triangulation< dim, spacedim >::MeshSmoothing smooth_grid=(::Triangulation< dim, spacedim >::none), const bool check_for_distorted_cells=false)

virtual MPI_Comm	get_communicator () const

virtual void	copy_triangulation (const ::Triangulation< dim, spacedim > &old_tria)

const std::vector< unsigned int > &	n_locally_owned_active_cells_per_processor () const

unsigned int	n_locally_owned_active_cells () const

virtual types::global_dof_index	n_global_active_cells () const

virtual std::size_t	memory_consumption () const

virtual unsigned int	n_global_levels () const

types::subdomain_id	locally_owned_subdomain () const

const std::set< unsigned int > &	ghost_owners () const

const std::set< unsigned int > &	level_ghost_owners () const

Public Member Functions inherited from Triangulation< dim, spacedim >
	Triangulation (const MeshSmoothing smooth_grid=none, const bool check_for_distorted_cells=false)

	Triangulation (const Triangulation< dim, spacedim > &t)

virtual void	clear ()

virtual void	set_mesh_smoothing (const MeshSmoothing mesh_smoothing)

void	set_boundary (const types::manifold_id number, const Boundary< dim, spacedim > &boundary_object)

void	set_boundary (const types::manifold_id number)

void	set_manifold (const types::manifold_id number, const Manifold< dim, spacedim > &manifold_object)

void	set_manifold (const types::manifold_id number)

void	set_all_manifold_ids (const types::manifold_id number)

void	set_all_manifold_ids_on_boundary (const types::manifold_id number)

void	set_all_manifold_ids_on_boundary (const types::boundary_id b_id, const types::manifold_id number)

const Boundary< dim, spacedim > &	get_boundary (const types::manifold_id number) const

const Manifold< dim, spacedim > &	get_manifold (const types::manifold_id number) const

std::vector< types::boundary_id >	get_boundary_ids () const

std::vector< types::boundary_id >	get_boundary_indicators () const DEAL_II_DEPRECATED

std::vector< types::manifold_id >	get_manifold_ids () const

virtual void	copy_triangulation (const Triangulation< dim, spacedim > &old_tria)

virtual void	create_triangulation_compatibility (const std::vector< Point< spacedim > > &vertices, const std::vector< CellData< dim > > &cells, const SubCellData &subcelldata)

void	flip_all_direction_flags ()

void	set_all_refine_flags ()

void	refine_global (const unsigned int times=1)

virtual bool	prepare_coarsening_and_refinement ()

void	save_refine_flags (std::ostream &out) const

void	save_refine_flags (std::vector< bool > &v) const

void	load_refine_flags (std::istream &in)

void	load_refine_flags (const std::vector< bool > &v)

void	save_coarsen_flags (std::ostream &out) const

void	save_coarsen_flags (std::vector< bool > &v) const

void	load_coarsen_flags (std::istream &out)

void	load_coarsen_flags (const std::vector< bool > &v)

bool	get_anisotropic_refinement_flag () const

void	clear_user_flags ()

void	save_user_flags (std::ostream &out) const

void	save_user_flags (std::vector< bool > &v) const

void	load_user_flags (std::istream &in)

void	load_user_flags (const std::vector< bool > &v)

void	clear_user_flags_line ()

void	save_user_flags_line (std::ostream &out) const

void	save_user_flags_line (std::vector< bool > &v) const

void	load_user_flags_line (std::istream &in)

void	load_user_flags_line (const std::vector< bool > &v)

void	clear_user_flags_quad ()

void	save_user_flags_quad (std::ostream &out) const

void	save_user_flags_quad (std::vector< bool > &v) const

void	load_user_flags_quad (std::istream &in)

void	load_user_flags_quad (const std::vector< bool > &v)

void	clear_user_flags_hex ()

void	save_user_flags_hex (std::ostream &out) const

void	save_user_flags_hex (std::vector< bool > &v) const

void	load_user_flags_hex (std::istream &in)

void	load_user_flags_hex (const std::vector< bool > &v)

void	clear_user_data ()

void	save_user_indices (std::vector< unsigned int > &v) const

void	load_user_indices (const std::vector< unsigned int > &v)

void	save_user_pointers (std::vector< void *> &v) const

void	load_user_pointers (const std::vector< void *> &v)

void	save_user_indices_line (std::vector< unsigned int > &v) const

void	load_user_indices_line (const std::vector< unsigned int > &v)

void	save_user_indices_quad (std::vector< unsigned int > &v) const

void	load_user_indices_quad (const std::vector< unsigned int > &v)

void	save_user_indices_hex (std::vector< unsigned int > &v) const

void	load_user_indices_hex (const std::vector< unsigned int > &v)

void	save_user_pointers_line (std::vector< void *> &v) const

void	load_user_pointers_line (const std::vector< void *> &v)

void	save_user_pointers_quad (std::vector< void *> &v) const

void	load_user_pointers_quad (const std::vector< void *> &v)

void	save_user_pointers_hex (std::vector< void *> &v) const

void	load_user_pointers_hex (const std::vector< void *> &v)

cell_iterator	begin (const unsigned int level=0) const

active_cell_iterator	begin_active (const unsigned int level=0) const

cell_iterator	end () const

cell_iterator	end (const unsigned int level) const

active_cell_iterator	end_active (const unsigned int level) const

cell_iterator	last () const

active_cell_iterator	last_active () const

IteratorRange< cell_iterator >	cell_iterators () const

IteratorRange< active_cell_iterator >	active_cell_iterators () const

IteratorRange< cell_iterator >	cell_iterators_on_level (const unsigned int level) const

IteratorRange< active_cell_iterator >	active_cell_iterators_on_level (const unsigned int level) const

face_iterator	begin_face () const

active_face_iterator	begin_active_face () const

face_iterator	end_face () const

vertex_iterator	begin_vertex () const

active_vertex_iterator	begin_active_vertex () const

vertex_iterator	end_vertex () const

unsigned int	n_lines () const

unsigned int	n_lines (const unsigned int level) const

unsigned int	n_active_lines () const

unsigned int	n_active_lines (const unsigned int level) const

unsigned int	n_quads () const

unsigned int	n_quads (const unsigned int level) const

unsigned int	n_active_quads () const

unsigned int	n_active_quads (const unsigned int level) const

unsigned int	n_hexs () const

unsigned int	n_hexs (const unsigned int level) const

unsigned int	n_active_hexs () const

unsigned int	n_active_hexs (const unsigned int level) const

unsigned int	n_cells () const

unsigned int	n_cells (const unsigned int level) const

unsigned int	n_active_cells () const

unsigned int	n_active_cells (const unsigned int level) const

unsigned int	n_faces () const

unsigned int	n_active_faces () const

unsigned int	n_levels () const

virtual bool	has_hanging_nodes () const

unsigned int	n_vertices () const

const std::vector< Point< spacedim > > &	get_vertices () const

unsigned int	n_used_vertices () const

bool	vertex_used (const unsigned int index) const

const std::vector< bool > &	get_used_vertices () const

unsigned int	max_adjacent_cells () const

Triangulation< dim, spacedim > &	get_triangulation ()

const Triangulation< dim, spacedim > &	get_triangulation () const

unsigned int	n_raw_lines () const

unsigned int	n_raw_lines (const unsigned int level) const

unsigned int	n_raw_quads () const

unsigned int	n_raw_quads (const unsigned int level) const

unsigned int	n_raw_hexs () const

unsigned int	n_raw_hexs (const unsigned int level) const

unsigned int	n_raw_cells (const unsigned int level) const

unsigned int	n_raw_faces () const

template<class Archive >
void	save (Archive &ar, const unsigned int version) const

template<class Archive >
void	load (Archive &ar, const unsigned int version)

	DeclException1 (ExcInvalidLevel, int,<< "The given level "<< arg1<< " is not in the valid range!")

	DeclException2 (ExcTriangulationNotEmpty, int, int,<< "You are trying to perform an operation on a triangulation "<< "that is only allowed if the triangulation is currently empty. "<< "However, it currently stores "<< arg1<< " vertices and has "<< "cells on "<< arg2<< " levels.")

	DeclException0 (ExcGridReadError)

	DeclException0 (ExcFacesHaveNoLevel)

	DeclException1 (ExcEmptyLevel, int,<< "You tried to do something on level "<< arg1<< ", but this level is empty.")

	DeclException0 (ExcNonOrientableTriangulation)

	DeclException1 (ExcBoundaryIdNotFound, types::boundary_id,<< "The given boundary_id "<< arg1<< " is not defined in this Triangulation!")

Public Member Functions inherited from Subscriptor
	Subscriptor ()

	Subscriptor (const Subscriptor &)

virtual	~Subscriptor ()

Subscriptor &	operator= (const Subscriptor &)

void	subscribe (const char *identifier=0) const

void	unsubscribe (const char *identifier=0) const

unsigned int	n_subscriptions () const

void	list_subscribers () const

	DeclException3 (ExcInUse, int, char *, std::string &,<< "Object of class "<< arg2<< " is still used by "<< arg1<< " other objects."<< "\"<< "(Additional information: "<< arg3<< ")\"<< "See the entry in the Frequently Asked Questions of "<< "deal.II (linked to from http://www.dealii.org/) for "<< "a lot more information on what this error means and "<< "how to fix programs in which it happens.")

	DeclException2 (ExcNoSubscriber, char , char ,<< "No subscriber with identifier <"<< arg2<< "> subscribes to this object of class "<< arg1<< ". Consequently, it cannot be unsubscribed.")

template<class Archive >
void	serialize (Archive &ar, const unsigned int version)

Private Member Functions
void	partition ()

Private Attributes
const bool	allow_artificial_cells

std::vector< types::subdomain_id >	true_subdomain_ids_of_cells

Additional Inherited Members
Public Types inherited from Triangulation< dim, spacedim >
enum	MeshSmoothing { none = 0x0, limit_level_difference_at_vertices = 0x1, eliminate_unrefined_islands = 0x2, patch_level_1 = 0x4, coarsest_level_1 = 0x8, allow_anisotropic_smoothing = 0x10, eliminate_refined_inner_islands = 0x100, eliminate_refined_boundary_islands = 0x200, do_not_produce_unrefined_islands = 0x400, smoothing_on_refinement, smoothing_on_coarsening, maximum_smoothing = 0xffff ^ allow_anisotropic_smoothing }

typedef TriaIterator< CellAccessor< dim, spacedim > >	cell_iterator

typedef TriaActiveIterator< CellAccessor< dim, spacedim > >	active_cell_iterator

enum	CellStatus { CELL_PERSIST, CELL_REFINE, CELL_COARSEN, CELL_INVALID }

Public Attributes inherited from Triangulation< dim, spacedim >
Signals	signals

Static Public Attributes inherited from Triangulation< dim, spacedim >
static const StraightBoundary< dim, spacedim >	straight_boundary = StraightBoundary<dim,spacedim>()

static const unsigned int	dimension = dim

static const unsigned int	space_dimension = spacedim

Protected Member Functions inherited from parallel::Triangulation< dim, spacedim >
virtual void	update_number_cache ()

Static Protected Member Functions inherited from Triangulation< dim, spacedim >
static void	write_bool_vector (const unsigned int magic_number1, const std::vector< bool > &v, const unsigned int magic_number2, std::ostream &out)

static void	read_bool_vector (const unsigned int magic_number1, std::vector< bool > &v, const unsigned int magic_number2, std::istream &in)

Protected Attributes inherited from parallel::Triangulation< dim, spacedim >
MPI_Comm	mpi_communicator

types::subdomain_id	my_subdomain

types::subdomain_id	n_subdomains

Protected Attributes inherited from Triangulation< dim, spacedim >
MeshSmoothing	smooth_grid

Detailed Description

template<int dim, int spacedim = dim>
class parallel::shared::Triangulation< dim, spacedim >

This is an extension of Triangulation class to automatically partition triangulation when run with MPI. Different from the parallel::distributed::Triangulation, the entire mesh is stored on each processor. However, cells are labeled according to the id of the processor which "owns" them. The partitioning is done automatically inside the DoFHandler by calling Metis. This enables distributing DoFs among processors and therefore splitting matrices and vectors across processors. The usage of this class is demonstrated in step-18.

Author: Denis Davydov, 2015

Definition at line 71 of file shared_tria.h.

Constructor & Destructor Documentation

§ Triangulation()

template<int dim, int spacedim>

Triangulation< dim, spacedim >::Triangulation	(	MPI_Comm	mpi_communicator,
		const typename ::Triangulation< dim, spacedim >::MeshSmoothing	smooth_grid = `(::Triangulation<dim,spacedim>::none)`,
		const bool	allow_artificial_cells = `false`
	)

Constructor.

If allow_aritifical_cells is true, this class will behave similar to parallel::distributed::Triangulation in that there will be locally owned, ghost and artificial cells.

Otherwise all non-locally owned cells are considered ghost.

Definition at line 48 of file shared_tria.cc.

§ ~Triangulation()

template<int dim, int spacedim>

Triangulation< dim, spacedim >::~Triangulation ( )

virtual

Destructor.

Reimplemented from parallel::Triangulation< dim, spacedim >.

Definition at line 114 of file shared_tria.cc.

Member Function Documentation

§ execute_coarsening_and_refinement()

template<int dim, int spacedim>

void Triangulation< dim, spacedim >::execute_coarsening_and_refinement ( )

virtual

Coarsen and refine the mesh according to refinement and coarsening flags set.

This step is equivalent to the Triangulation class with an addition of calling GridTools::partition_triangulation() at the end.

Reimplemented from Triangulation< dim, spacedim >.

Definition at line 121 of file shared_tria.cc.

§ create_triangulation()

template<int dim, int spacedim>

void Triangulation< dim, spacedim >::create_triangulation	(	const std::vector< Point< spacedim > > &	vertices,
		const std::vector< CellData< dim > > &	cells,
		const SubCellData &	subcelldata
	)

virtual

Create a triangulation.

This function also partitions triangulation based on the MPI communicator provided to constructor.

Reimplemented from Triangulation< dim, spacedim >.

Definition at line 130 of file shared_tria.cc.

§ get_true_subdomain_ids_of_cells()

template<int dim, int spacedim>

const std::vector< unsigned int > & Triangulation< dim, spacedim >::get_true_subdomain_ids_of_cells ( ) const

Return a vector of length Triangulation::n_active_cells() where each element stores the subdomain id of the owner of this cell. The elements of the vector are obviously the same as the subdomain ids for locally owned and ghost cells, but are also correct for artificial cells that do not store who the owner of the cell is in their subdomain_id field.

Definition at line 108 of file shared_tria.cc.

§ with_artificial_cells()

template<int dim, int spacedim>

bool Triangulation< dim, spacedim >::with_artificial_cells ( ) const

Return allow_artificial_cells , namely true if artificial cells are allowed.

Definition at line 101 of file shared_tria.cc.

§ partition()

template<int dim, int spacedim>

void Triangulation< dim, spacedim >::partition ( )

private

This function calls GridTools::partition_triangulation () and if requested in the constructor of the class marks artificial cells.

Definition at line 57 of file shared_tria.cc.

Member Data Documentation

§ allow_artificial_cells

template<int dim, int spacedim = dim>

const bool parallel::shared::Triangulation< dim, spacedim >::allow_artificial_cells

private

A flag to decide whether or not artificial cells are allowed.

Definition at line 136 of file shared_tria.h.

§ true_subdomain_ids_of_cells

template<int dim, int spacedim = dim>

std::vector<types::subdomain_id> parallel::shared::Triangulation< dim, spacedim >::true_subdomain_ids_of_cells

private

A vector containing subdomain IDs of cells obtained by partitioning using METIS. In case allow_artificial_cells is false, this vector is consistent with IDs stored in cell->subdomain_id() of the triangulation class. When allow_artificial_cells is true, cells which are artificial will have cell->subdomain_id() == numbers::artificial;

The original parition information is stored to allow using sequential DoF distribution and partitioning functions with semi-artificial cells.

Definition at line 155 of file shared_tria.h.

The documentation for this class was generated from the following files:

deal.II/distributed/shared_tria.h
/build/deal.ii-pdtiAo/deal.ii-8.4.2/source/distributed/shared_tria.cc

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

template<int dim, int spacedim = dim> class parallel::shared::Triangulation< dim, spacedim >

Constructor & Destructor Documentation

§ Triangulation()

§ ~Triangulation()

Member Function Documentation

§ execute_coarsening_and_refinement()

§ create_triangulation()

§ get_true_subdomain_ids_of_cells()

§ with_artificial_cells()

§ partition()

Member Data Documentation

§ allow_artificial_cells

§ true_subdomain_ids_of_cells

template<int dim, int spacedim = dim>
class parallel::shared::Triangulation< dim, spacedim >