Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 123]

►Nclipper
►Ndata
CLGdata
CSFdata
CSGdata
CTest_data	Class to return test data
CTESThkldata
CTESTxyzdata
►Ndatatypes
CABCD	Reflection data type: Hendrickson-Lattman coeff
CCompute_abcd_from_phifom	Compute from Phi_fom to ABCD ( C = D = 0 )
CCompute_add_abcd	Add two ABCD datalists
CCompute_add_fphi	Add two F_phi datalists
CCompute_diff_fsigf_from_fsigfano	Compute from F_sigF_anom to F_sigF (difference structure factor)
CCompute_EsigE_from_FsigF	Compute from F_sigF to E_sigE
CCompute_fphi_from_fsigf_phifom	Compute from F_sigF+Phi_fom to F_phi
CCompute_FsigF	Compute from F_sigF to F_sigF
CCompute_mean_fsigf_from_fsigfano	Compute from F_sigF_anom to F_sigF (mean structure factor)
CCompute_neg_fphi	Negate F_phi (i.e. advance phase by pi)
CCompute_phifom_from_abcd	Compute from ABCD to Phi_fom by phase integration (loses bimodality)
CCompute_scale_u
CCompute_scale_u_aniso	Apply scale and U to any scalable datatype
CCompute_scale_u_iso	Apply scale and U to any scalable datatype
CCompute_sub_fphi	Subtract two F_phi datalists
CD_sigD
CE_sigE	Reflection data type: E + sigE
CE_sigE_ano	Reflection data type: E(+) E(+) sigE(+) sigE(-) cov+-
CF_phi	Reflection data type: F + phi model or map coeff (e.g. Fcalc, Fbest)
CF_sigF	Reflection data type: F + sigF
CF_sigF_ano	Reflection data type: F(+) F(+) sigF(+) sigF(-) cov+-
CFlag	Reflection data type: Free-R flag
CFlag_bool	Reflection data type: boolean (false = missing)
CI_sigI	Reflection data type: I + sigI
CI_sigI_ano	Reflection data type: I(+) I(+) sigI(+) sigI(-) cov+-
CPhi_fom	Reflection data type: best phi + fom
CArray2d	Simple 2-d array class
CAtom	Atom class
CAtom_list	Atom list class
CAtomSF	Atomic scattering factor object
CAtomShapeFn	Atomic shape function object
CBasisFn_aniso_gaussian	Simple anisotropic Gaussian basis function
►CBasisFn_base	Abstract base class for resolution function basis functions
CFderiv	Object holding the basis function and its first two derivatives
CBasisFn_binner	Simple binning basis function
CBasisFn_expcubic	Simple Expcubic basis function
CBasisFn_gaussian	Simple Gaussian basis function
CBasisFn_linear	Simple linear basis function
CBasisFn_log_aniso_gaussian	Simple anisotropic Gaussian basis function
CBasisFn_log_gaussian	Simple log Gaussian basis function
CBasisFn_spline	Simple smooth basis function
CCCell	CCell container
CCell	Cell object
CCell_descr	Cell description (automatically converts to radians)
CCGrid_sampling	CGrid_sampling container
CCHKL_data	Reflection data list container
CCHKL_info	HKL list and indexing object container
CClipperInstance
CClipperInstantiator
CCNXmap	Non-Crystallographic map container
CCNXmap_operator	Non-Crystallographic map operator container
CCompare_grid
CContainer	Definition for a generic container Object
CCoord_frac	Fractional (cell) coordinates
CCoord_grid	Grid coordinate
CCoord_map	Map coordinate: this is like Coord_grid, but non-integer
CCoord_orth	Orthogonal (Angstrom) coordinates
CCoord_reci_frac	Fractional reciprocal coordinate (i.e. non-integer hkl)
CCoord_reci_orth	Orthogonal reciprocal coordinate (length of which is invresolsq)
CCResolution	Resolution container
CCSpacegroup	Spacegroup container
CCurv_frac	Fractional (cell) curvatures, with respect to fractional u,v,w
CCurv_map	Map coordinate curvatures, with respect to grid u,v,w
CCurv_orth	Orthogonal (Angstom) curvatures, with respect to orthogonal x,y,z
CCXmap	Crystallographic map container
CDatatype_base	Reflection data type objects
CEuler	Euler angle class
CEuler_ccp4	Euler_ccp4 angle class
CFFTmap	FFTmap: P1 map with symmetry used for calculating FFTs
CFFTmap_base
CFFTmap_p1	FFTmap_p1: low level P1 map used for calculating FFTs
CFFTmap_sparse_p1_base	Base type for sparse P1 fft maps
CFFTmap_sparse_p1_hx	FFTmap_sparse_p1_hx: low level sparse P1 map used for calculating FFTs
CFFTmap_sparse_p1_xh	FFTmap_sparse_p1_xh: low level sparse P1 map used for calculating FFTs
CGeneric_ordinal	Generic ordinal gernerator
CGrad_frac	Fractional (cell) gradient, with respect to fractional u,v,w
CGrad_map	Map coordinate gradient, with respect to grid u,v,w
CGrad_orth	Orthogonal (Angstom) gradient, with respect to orthogonal x,y,z
CGrid	Generic grid
CGrid_range	Grid range class: defines array limits for a grid
CGrid_sampling	Grid sampling of a unit cell
CHistogram	General histogram class
CHKL	Reflection 'Miller' index
CHKL_class	Reflection class
CHKL_data	HKL_data<>
CHKL_data_base	HKL_data_base
►CHKL_data_cacheobj
CKey
►CHKL_info	HKL list container and tree root
CHKL_reference_base	HKL reference base class
CHKL_reference_coord	HKL reference with coord-like behaviour
CHKL_reference_index	HKL reference with index-like behaviour
►CHKL_lookup	Fast reflection lookup object
Chlookup	Lookup on h
Cklookup	Lookup on k
Cllookup	Lookup on l
CHKL_sampling	HKL sampling of reciprocal space
CInterp_cubic	Wrapper class for third-order (cubic) interpolation fns
CInterp_linear	Wrapper class for first-order (linear) interpolation fns
CInterp_nearest	Wrapper class for zeroth-order (nearest neighbour) interpolation fns
CIsymop	Integerised symmetry matrix
CLogPhaseProb	Log phase probability distribution object
CMap_index_sort	Generic map sorting class
CMap_stats	Generic map statistics class
CMat33	3x3-matrix class
CMat33sym	Compressed form for 3x3 symmetric matrix class
CMatrix	General matrix class: like Array2d but with numerical methods
CMessage	Message handler class
CMessage_base	Base type for messages
CMessage_ctor	Constructor message (level = 2)
CMessage_dtor	Destructor message (level = 2)
CMessage_fatal	Fatal message (level = 9)
CMessage_generic	Generic message
CMessage_info	Info message (level = 1)
CMessage_warn	Warning message (level = 5)
CMetric_tensor	Metric tensor
CMutex	Mutex class: used for locking and unlocking shared resources
CNX_operator	NX_operator: non-crystal map operator
CNXmap	NXmap<T>: actual non-crystallographic map class
►CNXmap_base	NXmap_base: base for non-crystallographic map class
CMap_reference_base	Map reference base class
CMap_reference_coord	Map reference with coordinate-like behaviour
CMap_reference_index	Map reference with index-like behaviour
CNXmap_operator	NXmap_operator: non-crystal map operator referencing a particular NXmap
►CObjectCache	Object Cache manager
CReference	ObjectCache reference class
CPolar_ccp4	Polar_ccp4 angle class
CProb_phi_2d	2-d angular probability distibution class
CProperty	Template for a property holding an arbitrary type
CProperty_base	Base class for properties of arbitrary types
CPropertyManager	Class for holding a list of labelled properties of arbitrary types
CRamachandran	Ramachandran plot class
CRange	Range - upper and lower bounds of some type
CRange_sampling	Range sampling: discrete sampling of a real range
CResolution	Resolution in angstroms
CResolution_ordinal	Resolution ordinal gernerator
CResolutionFn	2nd order resolution function evaluator
CResolutionFn_nonlinear	2nd order resolution function evaluator
CRotation	Rotation class
CRTop	Rotation-translation operator
CRTop_frac	Fractional operator class
CRTop_orth	Orthogonal operator class
CSpacegroup	Spacegroup object
CSpgr_cacheobj
►CSpgr_descr	Spacegroup description
CSymop_codes	Vector of symop codes and associated methods
CString	String extension with simple parsing methods
CSymop	Crystallographic symmetry operator
CSymop_code	Compressed encoded symmetry operator
►CTargetFn_base	Abstract base class for least-squares resolution function target functions
CRderiv	Object holding the residual function and first two derivatives
CTargetFn_meanEnth	Simple mean |E|n target
CTargetFn_meanFnth	Simple mean |F|n target
CTargetFn_scaleEsq	|E|2 scaling target
CTargetFn_scaleF1F2	|F|2 scaling target
CTargetFn_scaleI1I2
CTargetFn_scaleLogF1F2	Log |F|2 scaling target
CTargetFn_scaleLogI1I2	Log |I| scaling target
CTargetFn_sigmaa
CTargetFn_sigmaa_omegaa
CTest_base	Base class for clipper self-test classes
CTest_core
CThread_base	Thread base class: Override this to create new threads
CU_aniso_frac	Anisotropic fractional atomic displacement parameters
CU_aniso_orth	Anisotropic orthogonal atomic displacement parameters
CUtil	Utility class
CVec3	3-vector class
CXmap	Xmap<T>: actual crystallographic map class
►CXmap_base	Xmap_base: base for crystallographic map class
CMap_reference_base	Map reference base class
CMap_reference_coord	Map reference with coordinate-like behaviour
CMap_reference_index	Map reference with index-like behaviour
►CXmap_cacheobj
CKey