org.forester.surfacing
Class SimpleDomain

java.lang.Object
  org.forester.surfacing.SimpleDomain

All Implemented Interfaces:

Comparable<Domain>, Domain

public class SimpleDomain
extends Object
implements Domain

Constructor Summary

SimpleDomain(String id_str)

Method Summary

void	addGoId(GoId go_id)
int	compareTo(Domain domain)
DomainId	getDomainId()
int	getFrom()
GoId	getGoId(int i)
int	getLength()
short	getNumber()
int	getNumberOfGoIds()
double	getPerDomainEvalue()
double	getPerDomainScore()
double	getPerSequenceEvalue()
double	getPerSequenceScore()
String	getSearchParameter()
int	getTo()
short	getTotalCount()
boolean	isCompleteQueryMatch()
boolean	isCompleteTargetMatch()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleDomain

public SimpleDomain(String id_str)

Method Detail

addGoId

public void addGoId(GoId go_id)

Specified by:

addGoId in interface Domain

compareTo

public int compareTo(Domain domain)

Specified by:

compareTo in interface Comparable<Domain>

getDomainId

public DomainId getDomainId()

Specified by:

getDomainId in interface Domain

getFrom

public int getFrom()

Specified by:

getFrom in interface Domain

getGoId

public GoId getGoId(int i)

Specified by:

getGoId in interface Domain

getLength

public int getLength()

getNumber

public short getNumber()

Specified by:

getNumber in interface Domain

getNumberOfGoIds

public int getNumberOfGoIds()

Specified by:

getNumberOfGoIds in interface Domain

getPerDomainEvalue

public double getPerDomainEvalue()

Specified by:

getPerDomainEvalue in interface Domain

getPerDomainScore

public double getPerDomainScore()

Specified by:

getPerDomainScore in interface Domain

getPerSequenceEvalue

public double getPerSequenceEvalue()

Specified by:

getPerSequenceEvalue in interface Domain

getPerSequenceScore

public double getPerSequenceScore()

Specified by:

getPerSequenceScore in interface Domain

getSearchParameter

public String getSearchParameter()

getTo

public int getTo()

Specified by:

getTo in interface Domain

getTotalCount

public short getTotalCount()

Specified by:

getTotalCount in interface Domain

isCompleteQueryMatch

public boolean isCompleteQueryMatch()

isCompleteTargetMatch

public boolean isCompleteTargetMatch()